BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0440.p (264 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774008.1| transcription regulator protein [Herbaspiril... 442 e-122 ref|ZP_03269580.1| transcriptional regulator, IclR family [Burkh... 283 2e-74 ref|YP_003607397.1| transcriptional regulator, IclR family [Burk... 275 6e-72 ref|YP_550149.1| IclR family transcriptional regulator [Polaromo... 262 5e-68 gb|EFV82865.1| IclR family Transcriptional regulator [Achromobac... 236 3e-60 >ref|YP_003774008.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62100.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 265 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 239/265 (90%), Positives = 249/265 (93%), Gaps = 1/265 (0%) Query: 1 MPDHDKQADDN-KIAGTAAFSKFMAVLQLIADQEAPLSIAQLAALSGYPRPTVYRILGAL 59 MP H DD +IAGTAAFSKFM VLQLIADQ+APL+IAQLAALSGYPRPTVYRIL AL Sbjct: 1 MPAHALPPDDAARIAGTAAFSKFMVVLQLIADQDAPLNIAQLAALSGYPRPTVYRILAAL 60 Query: 60 MAEGMVVENPRSKQYEVGPRLIHLASRAWDRSDIRTTAIESLRQLRDITRETVHLAVPSD 119 MAEGMVVENPR+KQYEVGPRLI+LASRAWDRSDIRTTAIESLRQLRD+TRETVHLAVPSD Sbjct: 61 MAEGMVVENPRNKQYEVGPRLINLASRAWDRSDIRTTAIESLRQLRDLTRETVHLAVPSD 120 Query: 120 HSMVYIEKLESPQAVRMDSRIGTRVTLYSSSVGKAYLAGLAQAQRERLMRTLHLEAFTSN 179 HSMVYIEKLESPQAVRMDSRIGTRVTLYSSSVGKAYLAGL +A RERLMRTLHL+AFT+N Sbjct: 121 HSMVYIEKLESPQAVRMDSRIGTRVTLYSSSVGKAYLAGLEEAHRERLMRTLHLQAFTAN 180 Query: 180 THTTLEALRADVEETRTRGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLP 239 THT L ALRADVE+TR RGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLP Sbjct: 181 THTELAALRADVEDTRARGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLP 240 Query: 240 DAQQAYVTPLLQACANISRKLAGPG 264 DAQQAYV PLLQACA ISRKLAGPG Sbjct: 241 DAQQAYVQPLLQACATISRKLAGPG 265 >ref|ZP_03269580.1| transcriptional regulator, IclR family [Burkholderia sp. H160] gb|EDZ98833.1| transcriptional regulator, IclR family [Burkholderia sp. H160] Length = 282 Score = 283 bits (723), Expect = 2e-74, Method: Composition-based stats. Identities = 154/258 (59%), Positives = 196/258 (75%), Gaps = 1/258 (0%) Query: 7 QADDNKIAGTAAFSKFMAVLQLIADQEAPLSIAQLAALSGYPRPTVYRILGALMAEGMVV 66 +AD +AG AAFSKF+AVLQLIAD + P +IA+L+A SGYPRPTV+RI+ AL AEG+VV Sbjct: 23 KADTRAVAGAAAFSKFIAVLQLIADAQTPPNIAKLSAASGYPRPTVHRIVAALQAEGLVV 82 Query: 67 ENPRSKQYEVGPRLIHLASRAWDRSDIRTTAIESLRQLRDITRETVHLAVPSDHSMVYIE 126 + +GPRLI+LAS +W+RSD+R A+++L QLRD+T ET+HLAVPS MVYIE Sbjct: 83 ATAGGNTFGLGPRLINLASHSWERSDLRLAAVDALMQLRDLTSETIHLAVPSQGEMVYIE 142 Query: 127 KLESPQAVRMDSRIGTRVTLYSSSVGKAYLAGLAQAQRERLMRTLHLEAFTSNTHTTLEA 186 KLESP AVRM SRIGTRV+L SSSVGKAYLA L++A+RE L++ L+ FT +T T L+A Sbjct: 143 KLESPHAVRMASRIGTRVSLTSSSVGKAYLATLSEAEREALLKDAPLQRFTEHTLTDLDA 202 Query: 187 LRADVEETRTRGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYV 246 +R +++ T RG+AED EENE I+CYGAAI G DG V CVS+S+P +RR D Q AY+ Sbjct: 203 VRRELDVTAQRGHAEDHEENEVSIWCYGAAIRGPDGRAVGCVSISMPTFRRRDDVQAAYI 262 Query: 247 TPLLQACANISRKLAGPG 264 PLL AC I+ +L GP Sbjct: 263 EPLLAACRTIAARL-GPA 279 >ref|YP_003607397.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] gb|ADG17886.1| transcriptional regulator, IclR family [Burkholderia sp. CCGE1002] Length = 285 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 150/260 (57%), Positives = 190/260 (73%), Gaps = 1/260 (0%) Query: 5 DKQADDNKIAGTAAFSKFMAVLQLIADQEAPLSIAQLAALSGYPRPTVYRILGALMAEGM 64 + +AD +AG AAFSKF+AVLQLIAD P ++A+L+A SGYPRPTV+RI+ AL AEG+ Sbjct: 24 ENKADSKAVAGAAAFSKFIAVLQLIADAPTPPNVAKLSAASGYPRPTVHRIVAALQAEGL 83 Query: 65 VVENPRSKQYEVGPRLIHLASRAWDRSDIRTTAIESLRQLRDITRETVHLAVPSDHSMVY 124 ++ + Y +GPRLI+LAS +W+RSD+R A+++L LRD+T ET+HLAVPS MVY Sbjct: 84 IIASGSGNAYGLGPRLINLASHSWERSDLRLAAVDALTALRDLTSETIHLAVPSQGEMVY 143 Query: 125 IEKLESPQAVRMDSRIGTRVTLYSSSVGKAYLAGLAQAQRERLMRTLHLEAFTSNTHTTL 184 IEKLESP AVRM SRIGTRV+L SSSVGKAYLA L A+RE L++ L FT +T T L Sbjct: 144 IEKLESPHAVRMASRIGTRVSLTSSSVGKAYLATLTVAEREALLKNAPLARFTEHTLTDL 203 Query: 185 EALRADVEETRTRGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQA 244 + +R +++ T RGYAEDREENE I CYGAAI G DG CVS+S+P +RR D Q Sbjct: 204 DDVRREIDATAQRGYAEDREENEDSICCYGAAIRGPDGRAAGCVSISMPTFRRRDDVQAT 263 Query: 245 YVTPLLQACANISRKLAGPG 264 Y+ PLL AC I+ +L GP Sbjct: 264 YIEPLLAACRTIAARL-GPA 282 >ref|YP_550149.1| IclR family transcriptional regulator [Polaromonas sp. JS666] gb|ABE45251.1| transcriptional regulator, IclR family [Polaromonas sp. JS666] Length = 277 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 143/250 (57%), Positives = 189/250 (75%) Query: 12 KIAGTAAFSKFMAVLQLIADQEAPLSIAQLAALSGYPRPTVYRILGALMAEGMVVENPRS 71 ++AGTA+FSKFM VLQL+AD PL++A L SGYPRPTV+RI+ AL+AE ++VEN RS Sbjct: 17 QVAGTASFSKFMHVLQLVADSTEPLNVAALMRASGYPRPTVHRIVAALLAERLLVENTRS 76 Query: 72 KQYEVGPRLIHLASRAWDRSDIRTTAIESLRQLRDITRETVHLAVPSDHSMVYIEKLESP 131 +GPRLI LASR+W RS++R A++ L++LRDIT ETVHLAVP+ +MVYIEKLESP Sbjct: 77 ASLALGPRLIQLASRSWGRSELRLAAVDELKRLRDITGETVHLAVPNGTTMVYIEKLESP 136 Query: 132 QAVRMDSRIGTRVTLYSSSVGKAYLAGLAQAQRERLMRTLHLEAFTSNTHTTLEALRADV 191 AVRM SRIGT V+L+S++VGKAY+A L A L+ L + +T +T T L L+A + Sbjct: 137 SAVRMASRIGTSVSLHSTAVGKAYMAALDAATLNPLLENLPMPRYTPSTVTELADLQAQL 196 Query: 192 EETRTRGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVTPLLQ 251 TR RG++ D EENEA IFC+GAAI+G+ GVPVA +SVS ++R+ + +QAYV PLL+ Sbjct: 197 RVTRERGWSVDSEENEAGIFCFGAAILGSRGVPVAAISVSTLIFRQKDNPEQAYVAPLLE 256 Query: 252 ACANISRKLA 261 AC IS ++A Sbjct: 257 ACRAISARIA 266 >gb|EFV82865.1| IclR family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 263 Score = 236 bits (601), Expect = 3e-60, Method: Composition-based stats. Identities = 141/252 (55%), Positives = 169/252 (67%), Gaps = 2/252 (0%) Query: 10 DNKIAGTAAFSKFMAVLQLIADQEAPLSIAQLAALSGYPRPTVYRILGALMAEGMVVENP 69 ++K+AG AAF+KFM VLQ +AD +P + A LA GYPRPTVYRI+ AL +GMV E Sbjct: 7 ESKVAGAAAFAKFMTVLQAVADAPSPPTAAALARGCGYPRPTVYRIVAALAEQGMVAET- 65 Query: 70 RSKQYEVGPRLIHLASRAWDRSDIRTTAIESLRQLRDITRETVHLAVPSDHSMVYIEKLE 129 Y +GPRL+ LASRAW + D+R T LR LRD T ETVHLAVP+ MVYI+KLE Sbjct: 66 -DGVYRLGPRLLSLASRAWSQFDLRATLAADLRALRDATGETVHLAVPAGTEMVYIDKLE 124 Query: 130 SPQAVRMDSRIGTRVTLYSSSVGKAYLAGLAQAQRERLMRTLHLEAFTSNTHTTLEALRA 189 SP VRM SR+G V L+SS+VGKAYLA L A RE L+R L LE+ T +L ALRA Sbjct: 125 SPGPVRMASRVGAAVALHSSAVGKAYLAALGDAAREPLLRDLPLESRMPGTLASLPALRA 184 Query: 190 DVEETRTRGYAEDREENEAQIFCYGAAIVGADGVPVACVSVSIPLYRRLPDAQQAYVTPL 249 + ET RGYA D EENE I CYG A+ A G PVACVS+S L+RR D Q AY+ PL Sbjct: 185 ALAETAARGYAMDNEENEPGIVCYGVALRDAAGHPVACVSISTLLFRRRDDPQSAYIEPL 244 Query: 250 LQACANISRKLA 261 L+ + KLA Sbjct: 245 LRLRDAATAKLA 256