BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0436.p (333 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004751327.1| AraC family transcriptional regulator [Colli... 439 e-121 ref|YP_001352935.1| AraC family transcriptional regulator [Janth... 436 e-120 ref|YP_001895639.1| AraC family transcriptional regulator [Burkh... 391 e-107 ref|ZP_06842012.1| transcriptional regulator, AraC family [Burkh... 386 e-105 ref|YP_558820.1| AraC family transcriptional regulator [Burkhold... 384 e-104 >ref|YP_004751327.1| AraC family transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK60504.1| transcriptional regulator, AraC family [Collimonas fungivorans Ter331] Length = 315 Score = 439 bits (1129), Expect = e-121, Method: Composition-based stats. Identities = 234/304 (76%), Positives = 260/304 (85%), Gaps = 1/304 (0%) Query: 31 HQRMVQLLTELAPDEGYNLSLLPDVRFLRSNRALSETPVLYEPGIVVVVQGRKRGFLGGQ 90 QRMV LLT+LAP+EGYNLS L DVRFLRSNR LS TPVLYEPGIVVV QGRKRGFLG Q Sbjct: 12 QQRMVSLLTKLAPNEGYNLSHLQDVRFLRSNRPLSVTPVLYEPGIVVVCQGRKRGFLGDQ 71 Query: 91 TYLYDARHYLAVSVPVPFTMETDATEKTPLLAIYFRLDFQLLAEVLVQMD-DADLSAHPQ 149 TY+YDARHYLAVSVPVPFTMETDA+EK PLLAIYFRLDF++LA++L+QM+ D A PQ Sbjct: 72 TYVYDARHYLAVSVPVPFTMETDASEKKPLLAIYFRLDFKMLADLLLQMEVDEPGDALPQ 131 Query: 150 TMFATRMDASMSASVLRFLEAMRVPMEARILGRSLVKEIYLRVLTGRQGASMRAALRTDG 209 MFAT MD MSASVLRFLEAM PMEA+ILG +LVKEIYLRVLTG QGASMRAAL G Sbjct: 132 GMFATAMDDKMSASVLRFLEAMDEPMEAKILGPALVKEIYLRVLTGDQGASMRAALVNKG 191 Query: 210 QYGKVARAIRKIHAAYADKLDVEQLAHEAGMSPPSFHAHFKAVTATSPMQYLKSTRLHQA 269 Q+GK+A+AI+KIHA+Y +KLDV+QLA EAGMS PSFH+HFK VTATSPMQYLKSTRLHQA Sbjct: 192 QFGKIAKAIKKIHASYGEKLDVDQLAKEAGMSAPSFHSHFKNVTATSPMQYLKSTRLHQA 251 Query: 270 RLLMLRNGLTVAEASARVGYESASQFSREFKRLFDLPPTQEVARMKDAYALPDPEPSALF 329 RLLM RNGLT A A VGYESASQFSREFKRLF P +EV RMK A+ALPD P++++ Sbjct: 252 RLLMARNGLTAASACVEVGYESASQFSREFKRLFGRTPVEEVTRMKQAFALPDAGPASIY 311 Query: 330 VSSH 333 VSSH Sbjct: 312 VSSH 315 >ref|YP_001352935.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR90733.1| transcriptional regulator, AraC family [Janthinobacterium sp. Marseille] Length = 315 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 231/314 (73%), Positives = 263/314 (83%), Gaps = 1/314 (0%) Query: 21 KKSAQKKSNAHQRMVQLLTELAPDEGYNLSLLPDVRFLRSNRALSETPVLYEPGIVVVVQ 80 K +++ HQ+M LL+ LAP+EGYNLS LPDVRFLRSNR +S TPVLYEPGIVVV Q Sbjct: 2 KHASKTGKRQHQQMATLLSRLAPNEGYNLSHLPDVRFLRSNRPMSVTPVLYEPGIVVVCQ 61 Query: 81 GRKRGFLGGQTYLYDARHYLAVSVPVPFTMETDATEKTPLLAIYFRLDFQLLAEVLVQMD 140 GRKRGFLG TY+YDA+HYLAVSVPVPFTMETDA+EK PLLAIYFRLDFQ+LA++L+Q++ Sbjct: 62 GRKRGFLGELTYVYDAQHYLAVSVPVPFTMETDASEKEPLLAIYFRLDFQVLADLLLQLE 121 Query: 141 DADLS-AHPQTMFATRMDASMSASVLRFLEAMRVPMEARILGRSLVKEIYLRVLTGRQGA 199 D + A PQ MFAT MD M+ASVLRFLEAM P+EA+ILG +LVKEIYLRVLTG QGA Sbjct: 122 GVDATDARPQGMFATAMDERMAASVLRFLEAMDQPIEAKILGNALVKEIYLRVLTGEQGA 181 Query: 200 SMRAALRTDGQYGKVARAIRKIHAAYADKLDVEQLAHEAGMSPPSFHAHFKAVTATSPMQ 259 SMRAAL +GQ+GKVARAI+KIH +Y+DKLDVE LAHEAGMS PSFHAHFK VT TSPMQ Sbjct: 182 SMRAALVNEGQFGKVARAIKKIHMSYSDKLDVELLAHEAGMSAPSFHAHFKHVTKTSPMQ 241 Query: 260 YLKSTRLHQARLLMLRNGLTVAEASARVGYESASQFSREFKRLFDLPPTQEVARMKDAYA 319 YLKSTRLHQARLLM RNGLT A A VGYESASQFSREFKRLF P EV RMK A++ Sbjct: 242 YLKSTRLHQARLLMARNGLTAATACLLVGYESASQFSREFKRLFGRSPVDEVERMKQAFS 301 Query: 320 LPDPEPSALFVSSH 333 LPD +P +++VSSH Sbjct: 302 LPDADPDSIYVSSH 315 >ref|YP_001895639.1| AraC family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16415.1| transcriptional regulator, AraC family [Burkholderia phytofirmans PsJN] Length = 315 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 204/314 (64%), Positives = 249/314 (79%), Gaps = 2/314 (0%) Query: 22 KSAQKKSNAHQRMVQLLTELAPDEGYNLSLLPDVRFLRSNRALSETPVLYEPGIVVVVQG 81 K + A QRMV LL LAP EGYNL++LPDVRFLRSNR LS TPVLY+PG+V+V QG Sbjct: 2 KHKHQDPGARQRMVALLENLAPLEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQG 61 Query: 82 RKRGFLGGQTYLYDARHYLAVSVPVPFTMETDATEKTPLLAIYFRLDFQLLAEVLVQMD- 140 RKRGFLG Y+YDA+HYLAVSVPVPF+MET+A+E PLLAIYFRLDF+L A++++Q+D Sbjct: 62 RKRGFLGETVYVYDAQHYLAVSVPVPFSMETEASEAEPLLAIYFRLDFKLAADLMLQLDE 121 Query: 141 -DADLSAHPQTMFATRMDASMSASVLRFLEAMRVPMEARILGRSLVKEIYLRVLTGRQGA 199 DA + A P+ M +T +D +SA+VLRFLEAM VP+EA +LG +LV+EIY VLTG QG Sbjct: 122 RDAGVPAEPRGMMSTPLDPKLSATVLRFLEAMSVPLEAELLGPALVREIYFHVLTGEQGG 181 Query: 200 SMRAALRTDGQYGKVARAIRKIHAAYADKLDVEQLAHEAGMSPPSFHAHFKAVTATSPMQ 259 SMRAAL GQ+ ++A+ IRKIHA Y + LD+ QLA EA MS PSFH+HFKAVT TSPMQ Sbjct: 182 SMRAALTAQGQFARIAKVIRKIHACYREPLDIGQLALEANMSVPSFHSHFKAVTRTSPMQ 241 Query: 260 YLKSTRLHQARLLMLRNGLTVAEASARVGYESASQFSREFKRLFDLPPTQEVARMKDAYA 319 YLKSTRLHQARLLM+RN +T A A +VGYESASQFSREFKRLF P +E RM+ ++A Sbjct: 242 YLKSTRLHQARLLMVRNEVTAAHACVQVGYESASQFSREFKRLFGRSPVEEAERMRRSFA 301 Query: 320 LPDPEPSALFVSSH 333 +P P P ++FV+SH Sbjct: 302 VPPPAPGSIFVASH 315 >ref|ZP_06842012.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] gb|EFG70237.1| transcriptional regulator, AraC family [Burkholderia sp. Ch1-1] Length = 315 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 203/306 (66%), Positives = 246/306 (80%), Gaps = 2/306 (0%) Query: 30 AHQRMVQLLTELAPDEGYNLSLLPDVRFLRSNRALSETPVLYEPGIVVVVQGRKRGFLGG 89 A QRMV LL LAP EGYNL++LPDVRFLRSNR LS TPVLY+PG+V+V QGRKRGFLG Sbjct: 10 ARQRMVALLENLAPVEGYNLTILPDVRFLRSNRPLSRTPVLYDPGVVIVCQGRKRGFLGD 69 Query: 90 QTYLYDARHYLAVSVPVPFTMETDATEKTPLLAIYFRLDFQLLAEVLVQMD--DADLSAH 147 Y+YDA+HYLAVSVPVPF+MET+A+ PLLAIYFRLDF++ A++++Q+D DA + A Sbjct: 70 TVYVYDAQHYLAVSVPVPFSMETEASAAKPLLAIYFRLDFKVAADLMLQLDERDAGVPAE 129 Query: 148 PQTMFATRMDASMSASVLRFLEAMRVPMEARILGRSLVKEIYLRVLTGRQGASMRAALRT 207 P+ M +T +DA +SA+VLRFLEAM VP+EA +LG +LV+EIY VLTG QG SMRAAL Sbjct: 130 PRGMMSTPLDAKLSATVLRFLEAMSVPLEAELLGPALVREIYFHVLTGEQGGSMRAALTA 189 Query: 208 DGQYGKVARAIRKIHAAYADKLDVEQLAHEAGMSPPSFHAHFKAVTATSPMQYLKSTRLH 267 GQ+ ++AR IRKIHA Y + LDV QLA EA MS P+ H+HFKAVT TSPMQYLKSTRLH Sbjct: 190 QGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHSHFKAVTRTSPMQYLKSTRLH 249 Query: 268 QARLLMLRNGLTVAEASARVGYESASQFSREFKRLFDLPPTQEVARMKDAYALPDPEPSA 327 QARLLM+RN +T A AS +VGYESASQFSREFKRLF P +E RM+ +A+P P P + Sbjct: 250 QARLLMVRNEVTAALASVQVGYESASQFSREFKRLFGRSPVEEAERMRRTFAIPPPAPGS 309 Query: 328 LFVSSH 333 +FV+SH Sbjct: 310 IFVASH 315 >ref|YP_558820.1| AraC family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE30768.1| transcriptional regulator, AraC family [Burkholderia xenovorans LB400] Length = 315 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 202/306 (66%), Positives = 245/306 (80%), Gaps = 2/306 (0%) Query: 30 AHQRMVQLLTELAPDEGYNLSLLPDVRFLRSNRALSETPVLYEPGIVVVVQGRKRGFLGG 89 A QRMV LL LAP EGYNL++LPDVRFLRSNR LS TPVLY+PG+V+V QGRKRGFLG Sbjct: 10 ARQRMVALLETLAPVEGYNLTVLPDVRFLRSNRPLSRTPVLYDPGVVIVCQGRKRGFLGD 69 Query: 90 QTYLYDARHYLAVSVPVPFTMETDATEKTPLLAIYFRLDFQLLAEVLVQMD--DADLSAH 147 Y+YDA+HYLAVSVPVPF+MET+A+ PLLAIY RLDF++ A++++Q+D DA + A Sbjct: 70 TVYVYDAQHYLAVSVPVPFSMETEASAAKPLLAIYLRLDFKVAADLMLQLDERDAGVPAE 129 Query: 148 PQTMFATRMDASMSASVLRFLEAMRVPMEARILGRSLVKEIYLRVLTGRQGASMRAALRT 207 P+ M +T +DA +SA+VLRFLEAM VP+EA +LG +LV+EIY VLTG QG SMRAAL Sbjct: 130 PRGMMSTPLDAKLSATVLRFLEAMSVPLEAELLGPALVREIYFHVLTGEQGGSMRAALTA 189 Query: 208 DGQYGKVARAIRKIHAAYADKLDVEQLAHEAGMSPPSFHAHFKAVTATSPMQYLKSTRLH 267 GQ+ ++AR IRKIHA Y + LDV QLA EA MS P+ HAHFKAVT TSPMQYLKSTRLH Sbjct: 190 QGQFARIARVIRKIHACYREPLDVGQLALEANMSVPTLHAHFKAVTRTSPMQYLKSTRLH 249 Query: 268 QARLLMLRNGLTVAEASARVGYESASQFSREFKRLFDLPPTQEVARMKDAYALPDPEPSA 327 QARLLM+RN +T A AS +VGYESASQFSREF+RLF P +E RM+ +A+P P P + Sbjct: 250 QARLLMVRNEVTAASASVQVGYESASQFSREFRRLFGRSPVEEAERMRRTFAIPPPAPGS 309 Query: 328 LFVSSH 333 +FV+SH Sbjct: 310 IFVASH 315