BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0433.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_522107.1| hypothetical protein RS03935 [Ralstonia solanac...   166   9e-40

>ref|NP_522107.1| hypothetical protein RS03935 [Ralstonia solanacearum GMI1000]
 emb|CAD17697.1| hypothetical protein RSp0546 [Ralstonia solanacearum GMI1000]
          Length = 139

 Score =  166 bits (420), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 79/140 (56%), Positives = 102/140 (72%), Gaps = 2/140 (1%)

Query: 1   MKIVQDCWNEIDTYNCQYGAHIFDGSTAKIYVNNWLSPSKNLLFTFSE-DDEGFTGHCVL 59
           MKI++DCW++IDT+NCQYGAHIFDG TAKIYVN+WL+ S  +   F   +DEGF GHC+L
Sbjct: 1   MKIIEDCWDDIDTFNCQYGAHIFDGVTAKIYVNHWLATSSKIRGDFCRINDEGFVGHCIL 60

Query: 60  VFEGVKAFDFSVTLVDTDTRGNFVLQKPITYHYDGLITEKAVKYVLEGSLHGFRSSVDIS 119
           VF+GVK FDFS+ L   +  G    + P+ +HYD  +  +  +Y  EGSL GF SSV + 
Sbjct: 61  VFDGVKTFDFSI-LQWFEKNGEVAWRDPVVFHYDAEVEGEIRRYEFEGSLQGFPSSVSVC 119

Query: 120 IEAQRFVLHILGEDEPARQS 139
           +EA+RF LHILG DEPAR+S
Sbjct: 120 VEAKRFSLHILGGDEPARES 139