BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0429.p (415 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773706.1| sugar ABC transporter periplasmic protein [H... 760 0.0 ref|YP_004750958.1| family 1 extracellular solute-binding protei... 682 0.0 ref|YP_004230558.1| family 1 extracellular solute-binding protei... 647 0.0 ref|ZP_03570698.1| extracellular solute-binding protein, family ... 644 0.0 ref|YP_001888329.1| family 1 extracellular solute-binding protei... 642 0.0 >ref|YP_003773706.1| sugar ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61798.1| ABC-type sugar transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 415 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 389/415 (93%), Positives = 404/415 (97%) Query: 1 MKKMMRMTVIAGCLAASAAWSAAALAGTLAVNIAYKGAVQRTVWQSTVDEFKKANPDVDV 60 MKKM+RM VIAGCLAA+AAW+ AA AGTLA+NIAYKGAVQR VWQST+DEFKKANPDVD+ Sbjct: 1 MKKMIRMGVIAGCLAATAAWNTAATAGTLAINIAYKGAVQRAVWQSTMDEFKKANPDVDI 60 Query: 61 KVSFIEEEAYKVQLPGWLSTQAPDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYA 120 K SFIEEEAYKVQLPGWLSTQAPDIINWHNGERMAFYASRGLLED+SEDWKKNGWD+TYA Sbjct: 61 KPSFIEEEAYKVQLPGWLSTQAPDIINWHNGERMAFYASRGLLEDVSEDWKKNGWDATYA 120 Query: 121 STKEASSWQGKQYSAPTVYYSWGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIAP 180 STKEASSW GKQYS PTVYYSWGMFYRKDLFKKVGIA EPK+WDEFL+ACKKLKAAGIAP Sbjct: 121 STKEASSWHGKQYSVPTVYYSWGMFYRKDLFKKVGIAGEPKTWDEFLDACKKLKAAGIAP 180 Query: 181 IAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFI 240 IAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGD+AYTD RVKKV+TAWKSLIDNKYFI Sbjct: 181 IAVGGRDAWTLAGWFDYLDLRINGNAFHQQLMAGDIAYTDARVKKVHTAWKSLIDNKYFI 240 Query: 241 DNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGP 300 DNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGP Sbjct: 241 DNALSYDLDGAQPFLFQGKAAMMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGP 300 Query: 301 TESIHIPAKARNKTDARRFIAFVGTPAISAKLADGLGSLPANSKSPAPADPISRIGFEIL 360 TESIHIPAKARNK DARRFIAFVGTPAISAKLA+GLGSLPANSKSPAP +PISRIGFEIL Sbjct: 301 TESIHIPAKARNKADARRFIAFVGTPAISAKLAEGLGSLPANSKSPAPTEPISRIGFEIL 360 Query: 361 SNAKGGISQFYDRDMTKEMADEGMKGMQKFVSDPTKIDDVLNELEQSRKRIYKKS 415 SNAKGGISQFYDRDMTKEMADEGMKGMQKFVSDPT+IDDVLNELEQSRKRIYKKS Sbjct: 361 SNAKGGISQFYDRDMTKEMADEGMKGMQKFVSDPTRIDDVLNELEQSRKRIYKKS 415 >ref|YP_004750958.1| family 1 extracellular solute-binding protein [Collimonas fungivorans Ter331] gb|AEK60135.1| extracellular solute-binding protein, family 1 [Collimonas fungivorans Ter331] Length = 412 Score = 682 bits (1761), Expect = 0.0, Method: Composition-based stats. Identities = 329/394 (83%), Positives = 363/394 (92%) Query: 22 AAALAGTLAVNIAYKGAVQRTVWQSTVDEFKKANPDVDVKVSFIEEEAYKVQLPGWLSTQ 81 +A AGTLAVNIAYKGA QR VWQST+DEFKKANPDVD+K +F+EEEAYKVQLPGWLSTQ Sbjct: 19 GSAAAGTLAVNIAYKGASQRAVWQSTLDEFKKANPDVDIKAAFVEEEAYKVQLPGWLSTQ 78 Query: 82 APDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYASTKEASSWQGKQYSAPTVYYS 141 APD+INWHNGERMAFYASRGLLEDLSEDWKKN WD YASTK+ASS++GKQY+ PTVYYS Sbjct: 79 APDVINWHNGERMAFYASRGLLEDLSEDWKKNKWDEVYASTKDASSYKGKQYALPTVYYS 138 Query: 142 WGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIAPIAVGGRDAWTLAGWFDYLDLR 201 WG+FYRKD+FK GIA EPK+W+E L+AC KLKAAG+ P AVGGRD+WTLAGWFDYLDLR Sbjct: 139 WGLFYRKDVFKTAGIAGEPKTWEELLDACNKLKAAGVTPFAVGGRDSWTLAGWFDYLDLR 198 Query: 202 INGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAA 261 +NGN FHQQLMAG++ YTD RVKKVYTAWK+LIDNKYFIDN+LSYDLDGAQPFLFQGKAA Sbjct: 199 LNGNVFHQQLMAGEIPYTDARVKKVYTAWKTLIDNKYFIDNSLSYDLDGAQPFLFQGKAA 258 Query: 262 MMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGPTESIHIPAKARNKTDARRFIA 321 MMLMGTFIAKGFP KLA MGYFQFPIIDA +PTAE+GP ESIHIP+KARNK DA RF+A Sbjct: 259 MMLMGTFIAKGFPPKLAANMGYFQFPIIDAKIPTAEDGPAESIHIPSKARNKVDAHRFLA 318 Query: 322 FVGTPAISAKLADGLGSLPANSKSPAPADPISRIGFEILSNAKGGISQFYDRDMTKEMAD 381 FVGTPAISAKLA+GLGSLPANSKSP P + ISRIGF+ILSN KGGI+QFYDRDMTKEMAD Sbjct: 319 FVGTPAISAKLAEGLGSLPANSKSPEPTESISRIGFQILSNTKGGIAQFYDRDMTKEMAD 378 Query: 382 EGMKGMQKFVSDPTKIDDVLNELEQSRKRIYKKS 415 EGMKGMQKF+SDP K+D+VLNELEQSRKRIYKK+ Sbjct: 379 EGMKGMQKFISDPAKLDEVLNELEQSRKRIYKKT 412 >ref|YP_004230558.1| family 1 extracellular solute-binding protein [Burkholderia sp. CCGE1001] gb|ADX57498.1| extracellular solute-binding protein family 1 [Burkholderia sp. CCGE1001] Length = 417 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 312/393 (79%), Positives = 351/393 (89%) Query: 22 AAALAGTLAVNIAYKGAVQRTVWQSTVDEFKKANPDVDVKVSFIEEEAYKVQLPGWLSTQ 81 + A AGTL NIA+KGA QR VWQS VD+FKKA+P +DVKVSFI+EEAYKVQLPGWLST Sbjct: 25 STAQAGTLTANIAFKGASQRAVWQSVVDDFKKAHPGIDVKVSFIDEEAYKVQLPGWLSTV 84 Query: 82 APDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYASTKEASSWQGKQYSAPTVYYS 141 APDI+NWH+GERMA+YA RGL EDLS DW KNGW+ YASTKEASS++GKQY+APTVYYS Sbjct: 85 APDIVNWHDGERMAYYAQRGLFEDLSGDWAKNGWNDMYASTKEASSYKGKQYAAPTVYYS 144 Query: 142 WGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIAPIAVGGRDAWTLAGWFDYLDLR 201 WGMFYRKDLF+KVGI+ EPK+WD+FL+ CKKLKAAGIAPIAV GRDAWTLAGWFDYLDLR Sbjct: 145 WGMFYRKDLFQKVGISGEPKTWDQFLDDCKKLKAAGIAPIAVAGRDAWTLAGWFDYLDLR 204 Query: 202 INGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAA 261 +NGNAFHQ+LMAG++AYTDPRVKKVYT WK LID YFIDN+LSYDLD QPFLFQGKAA Sbjct: 205 LNGNAFHQKLMAGEIAYTDPRVKKVYTTWKQLIDAGYFIDNSLSYDLDAVQPFLFQGKAA 264 Query: 262 MMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGPTESIHIPAKARNKTDARRFIA 321 MMLMGTFI GFPA + PEMGYFQFPIIDANVPTAE+GP ES+HIP+KA+NK DA F+A Sbjct: 265 MMLMGTFITGGFPANVKPEMGYFQFPIIDANVPTAEDGPVESLHIPSKAKNKADAHTFLA 324 Query: 322 FVGTPAISAKLADGLGSLPANSKSPAPADPISRIGFEILSNAKGGISQFYDRDMTKEMAD 381 FV TP I AKLA GLGSL ANSKSP P DPIS+IGF+IL+N KGGI+QFYDRDMTKEMAD Sbjct: 325 FVETPEIGAKLATGLGSLSANSKSPEPEDPISKIGFQILANTKGGIAQFYDRDMTKEMAD 384 Query: 382 EGMKGMQKFVSDPTKIDDVLNELEQSRKRIYKK 414 EGMKGMQ+F+SDP+K+D VL +LEQ+RKRIYKK Sbjct: 385 EGMKGMQQFISDPSKLDSVLAQLEQTRKRIYKK 417 >ref|ZP_03570698.1| extracellular solute-binding protein, family 1 [Burkholderia multivorans CGD2M] ref|ZP_03577341.1| extracellular solute-binding protein, family 1 [Burkholderia multivorans CGD2] gb|EEE08918.1| extracellular solute-binding protein, family 1 [Burkholderia multivorans CGD2] gb|EEE16605.1| extracellular solute-binding protein, family 1 [Burkholderia multivorans CGD2M] Length = 419 Score = 644 bits (1662), Expect = 0.0, Method: Composition-based stats. Identities = 307/389 (78%), Positives = 350/389 (89%) Query: 26 AGTLAVNIAYKGAVQRTVWQSTVDEFKKANPDVDVKVSFIEEEAYKVQLPGWLSTQAPDI 85 AGTL++NIA+KGA QR VWQST+D F +A+PD+DVK +F++EEAYKVQLP WL+T APD+ Sbjct: 31 AGTLSINIAFKGASQRAVWQSTLDAFHRAHPDIDVKATFVDEEAYKVQLPAWLTTVAPDV 90 Query: 86 INWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYASTKEASSWQGKQYSAPTVYYSWGMF 145 +NWH GERMA+YA RGL EDLS DW KNGWD+ YAST+ ASS+ GKQY+APTVYYSWG+F Sbjct: 91 VNWHAGERMAYYAKRGLFEDLSGDWTKNGWDAMYASTRSASSYNGKQYAAPTVYYSWGLF 150 Query: 146 YRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIAPIAVGGRDAWTLAGWFDYLDLRINGN 205 YRKDLF+KVGIA EPK+WD+FL+ACKKLKAAGI PIAVGGRDAWTLAGWFDYLDLR+NGN Sbjct: 151 YRKDLFRKVGIANEPKTWDQFLDACKKLKAAGITPIAVGGRDAWTLAGWFDYLDLRLNGN 210 Query: 206 AFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAAMMLM 265 AFHQQLMAGDV YTDPRVKKVYT WKSLID YFIDNALSYDLDGAQPFLFQGKAAMMLM Sbjct: 211 AFHQQLMAGDVPYTDPRVKKVYTTWKSLIDAGYFIDNALSYDLDGAQPFLFQGKAAMMLM 270 Query: 266 GTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGPTESIHIPAKARNKTDARRFIAFVGT 325 GTFIA GFPA + PEMGY++FPIIDANVPTAE+GP ES+HIP KA+NK DA F+AFV T Sbjct: 271 GTFIAAGFPANVKPEMGYYRFPIIDANVPTAEDGPVESLHIPTKAKNKADAHTFLAFVET 330 Query: 326 PAISAKLADGLGSLPANSKSPAPADPISRIGFEILSNAKGGISQFYDRDMTKEMADEGMK 385 P I AKLA+GLGSL ANSKSP PADPISRIGF IL++ KGG++QFYDRDMTKEMADEGMK Sbjct: 331 PEIGAKLAEGLGSLSANSKSPEPADPISRIGFRILADTKGGVAQFYDRDMTKEMADEGMK 390 Query: 386 GMQKFVSDPTKIDDVLNELEQSRKRIYKK 414 GMQ+FV++P ++D VL +LEQ+RKRIYKK Sbjct: 391 GMQQFVANPAQLDAVLAQLEQTRKRIYKK 419 >ref|YP_001888329.1| family 1 extracellular solute-binding protein [Burkholderia phytofirmans PsJN] gb|ACD18959.1| extracellular solute-binding protein family 1 [Burkholderia phytofirmans PsJN] Length = 417 Score = 642 bits (1656), Expect = 0.0, Method: Composition-based stats. Identities = 306/393 (77%), Positives = 347/393 (88%) Query: 22 AAALAGTLAVNIAYKGAVQRTVWQSTVDEFKKANPDVDVKVSFIEEEAYKVQLPGWLSTQ 81 + A AGTL NIA+KGA QR VWQS +D+FKKA+P +DVKVSF++EEAYKVQLPGWL+T Sbjct: 25 STAQAGTLTANIAFKGASQRAVWQSVIDDFKKAHPGIDVKVSFVDEEAYKVQLPGWLTTV 84 Query: 82 APDIINWHNGERMAFYASRGLLEDLSEDWKKNGWDSTYASTKEASSWQGKQYSAPTVYYS 141 APDI+NWH+GERMA+YA RGL EDLS DW KNGW+ YASTKEASS++GKQY+APTVYYS Sbjct: 85 APDIVNWHDGERMAYYAQRGLFEDLSGDWAKNGWNEMYASTKEASSYKGKQYAAPTVYYS 144 Query: 142 WGMFYRKDLFKKVGIAAEPKSWDEFLEACKKLKAAGIAPIAVGGRDAWTLAGWFDYLDLR 201 WGMFYRKDLF+K GI+ EPK+WD+FLE CKKLKAAGI PIAV GRD+WTLAGWFDYLDLR Sbjct: 145 WGMFYRKDLFQKAGISGEPKTWDQFLEDCKKLKAAGITPIAVAGRDSWTLAGWFDYLDLR 204 Query: 202 INGNAFHQQLMAGDVAYTDPRVKKVYTAWKSLIDNKYFIDNALSYDLDGAQPFLFQGKAA 261 +NGNAFHQ+LMAG++ YTDPRVKKVYT WK LID YFIDN+LSYDLD QPFLFQGKAA Sbjct: 205 LNGNAFHQKLMAGEIPYTDPRVKKVYTTWKQLIDAGYFIDNSLSYDLDSVQPFLFQGKAA 264 Query: 262 MMLMGTFIAKGFPAKLAPEMGYFQFPIIDANVPTAEEGPTESIHIPAKARNKTDARRFIA 321 MMLMGTFI GFP + PEMGYFQFPIIDA VPTAE+GP ES+HIP+KA+NK DA F+A Sbjct: 265 MMLMGTFITAGFPPNVKPEMGYFQFPIIDAKVPTAEDGPVESLHIPSKAKNKADAHTFLA 324 Query: 322 FVGTPAISAKLADGLGSLPANSKSPAPADPISRIGFEILSNAKGGISQFYDRDMTKEMAD 381 FV TP I AKLA GLGSL ANSKSP P DPISRIGF+IL+N KGGI+QFYDRDMTKEMAD Sbjct: 325 FVETPEIGAKLATGLGSLSANSKSPEPEDPISRIGFQILANTKGGIAQFYDRDMTKEMAD 384 Query: 382 EGMKGMQKFVSDPTKIDDVLNELEQSRKRIYKK 414 EGMKGMQ+F+SDPTK+DDVL +LEQ+R+RIYKK Sbjct: 385 EGMKGMQQFISDPTKLDDVLAQLEQTRRRIYKK 417