BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0427.p (307 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirill... 472 e-131 ref|ZP_02884524.1| binding-protein-dependent transport systems i... 432 e-119 ref|YP_003607857.1| binding-protein-dependent transporters inner... 430 e-118 ref|YP_004750959.1| N-acetyl-D-glucosamine ABC transport system,... 427 e-117 ref|YP_001858571.1| binding-protein-dependent transport systems ... 424 e-117 >ref|YP_003773705.1| sugar ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ61797.1| ABC-type sugar transport systems, permease component protein [Herbaspirillum seropedicae SmR1] Length = 311 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 276/287 (96%), Positives = 283/287 (98%) Query: 21 SGPQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFSWDGMTAPKYVGLANYIE 80 SGPQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFSWDGMT P++VGLANY+E Sbjct: 25 SGPQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFSWDGMTEPRFVGLANYVE 84 Query: 81 LFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKVAGMRVVKSLFFAPFVLSGVVV 140 LFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKV GMRVVKSLFFAPFVLSGVVV Sbjct: 85 LFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKVIGMRVVKSLFFAPFVLSGVVV 144 Query: 141 GLIYSWFYDPSFGLLSLILGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALN 200 GL+YSWFYDPSFGLLSL+ GQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALN Sbjct: 145 GLMYSWFYDPSFGLLSLLFGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALN 204 Query: 201 HDQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESS 260 HDQVEAARMEGAKGW+MLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESS Sbjct: 205 HDQVEAARMEGAKGWTMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESS 264 Query: 261 TVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIIYQLRRMLRDER 307 TVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYI+YQLRRMLR ER Sbjct: 265 TVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIVYQLRRMLRAER 311 >ref|ZP_02884524.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT10062.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 322 Score = 432 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 230/285 (80%), Positives = 258/285 (90%) Query: 23 PQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFSWDGMTAPKYVGLANYIELF 82 P +A R+ RAAF FLAPACVM +YV++PIL TI LS F+WDGMT P +VGLANY+ELF Sbjct: 38 PSPTARRQRRAAFLFLAPACVMVAIYVIWPILSTIRLSLFNWDGMTEPTFVGLANYVELF 97 Query: 83 HAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKVAGMRVVKSLFFAPFVLSGVVVGL 142 +A TFYTALKNNV+WLL+FLLAPPMGLA+ALYLNQ VAG+R+VKSLFFAPFVLSGVVVGL Sbjct: 98 NAQTFYTALKNNVIWLLLFLLAPPMGLAVALYLNQAVAGIRIVKSLFFAPFVLSGVVVGL 157 Query: 143 IYSWFYDPSFGLLSLILGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLTGLTALNHD 202 I+SWFYDP+FGLL+LILG GVPVLGD RYATFGI+FAALWPQTAYCMIL+LTGLT+LN + Sbjct: 158 IFSWFYDPTFGLLALILGHGVPVLGDPRYATFGIVFAALWPQTAYCMILYLTGLTSLNAE 217 Query: 203 QVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSGGPYESSTV 262 Q+EAARMEGA+GWSML +VILPQLR TTFMA VV+IIGALRSFDLISVMT GGP+ESSTV Sbjct: 218 QIEAARMEGARGWSMLWHVILPQLRPTTFMAIVVTIIGALRSFDLISVMTGGGPFESSTV 277 Query: 263 LAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIIYQLRRMLRDER 307 LAYY YDQAIKYYR GYSAAVAV LF IMLVYI+Y LRRMLR E+ Sbjct: 278 LAYYMYDQAIKYYRIGYSAAVAVVLFGIMLVYIVYHLRRMLRTEQ 322 >ref|YP_003607857.1| binding-protein-dependent transporters inner membrane component [Burkholderia sp. CCGE1002] gb|ADG18346.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1002] Length = 324 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 227/293 (77%), Positives = 260/293 (88%) Query: 15 PAATPVSGPQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFSWDGMTAPKYVG 74 P A+ GP +A R+ RAAF FLAPAC M VYV++PIL TI LSFF+WDGMT P ++G Sbjct: 32 PLASRRRGPTPTARRQRRAAFLFLAPACFMVAVYVVWPILSTIRLSFFNWDGMTEPTFIG 91 Query: 75 LANYIELFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKVAGMRVVKSLFFAPFV 134 LANYIEL H PTFYTAL+NN++WL++FLLAPPMGLA+ALYLNQ VAG+R+VKSLFFAPFV Sbjct: 92 LANYIELVHTPTFYTALRNNLIWLVLFLLAPPMGLAVALYLNQAVAGIRIVKSLFFAPFV 151 Query: 135 LSGVVVGLIYSWFYDPSFGLLSLILGQGVPVLGDARYATFGIIFAALWPQTAYCMILFLT 194 LSGVVVGLI+SWFYDP+FGLL+++LG GVPVLGD RYATFGI+FAALWPQTAYCMIL+LT Sbjct: 152 LSGVVVGLIFSWFYDPTFGLLAMMLGHGVPVLGDPRYATFGIVFAALWPQTAYCMILYLT 211 Query: 195 GLTALNHDQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVSIIGALRSFDLISVMTSG 254 GLT LN +Q+EAARMEGA+GWSML +VILPQLR TTFMA VV+IIGALRSFDLISVMT G Sbjct: 212 GLTTLNAEQIEAARMEGAQGWSMLWHVILPQLRPTTFMAIVVTIIGALRSFDLISVMTGG 271 Query: 255 GPYESSTVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIIYQLRRMLRDER 307 GP+ESSTVLAY+ YDQAIKYYR GYSAA+AV LF IMLVYI+Y LRRMLR E+ Sbjct: 272 GPFESSTVLAYFMYDQAIKYYRIGYSAAIAVVLFGIMLVYIVYHLRRMLRAEQ 324 >ref|YP_004750959.1| N-acetyl-D-glucosamine ABC transport system, permease [Collimonas fungivorans Ter331] gb|AEK60136.1| N-Acetyl-D-glucosamine ABC transport system, permease protein [Collimonas fungivorans Ter331] Length = 310 Score = 427 bits (1098), Expect = e-117, Method: Composition-based stats. Identities = 245/310 (79%), Positives = 276/310 (89%), Gaps = 3/310 (0%) Query: 1 MLAPTSAAQPPATQPAATPVSGPQR---SAARRNRAAFWFLAPACVMTLVYVLYPILYTI 57 M A T A P QP+ +G R +A+RRNRAA WFLAPAC+MT VYVLYPI YTI Sbjct: 1 MPAQTPAITPARPQPSDLAAAGKPRRRSTASRRNRAAIWFLAPACLMTAVYVLYPIFYTI 60 Query: 58 YLSFFSWDGMTAPKYVGLANYIELFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQ 117 YLSFF+WDGM P+++GLANY+E+ HAPTF+ ALKNN+ WLL+FLLAPP GL ALYLNQ Sbjct: 61 YLSFFNWDGMMKPEFIGLANYVEMLHAPTFHVALKNNLTWLLLFLLAPPAGLIAALYLNQ 120 Query: 118 KVAGMRVVKSLFFAPFVLSGVVVGLIYSWFYDPSFGLLSLILGQGVPVLGDARYATFGII 177 KV G+R++K+LFFAPFVLSGVVVGLI+SWFYDP+FGLL+L+LG GVPVLGD RY TFGII Sbjct: 121 KVRGIRLIKALFFAPFVLSGVVVGLIFSWFYDPTFGLLTLLLGHGVPVLGDPRYVTFGII 180 Query: 178 FAALWPQTAYCMILFLTGLTALNHDQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVS 237 FAALWPQTAYCMILFLTGLT++N DQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVV+ Sbjct: 181 FAALWPQTAYCMILFLTGLTSINADQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVT 240 Query: 238 IIGALRSFDLISVMTSGGPYESSTVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIIY 297 IIGALRSFDLISVM+SGGP+ESSTVLAYY YDQAIKYYRQGYSAA+AVTLFAIML+YI+Y Sbjct: 241 IIGALRSFDLISVMSSGGPFESSTVLAYYTYDQAIKYYRQGYSAAIAVTLFAIMLIYIVY 300 Query: 298 QLRRMLRDER 307 QLRR+LRDER Sbjct: 301 QLRRLLRDER 310 >ref|YP_001858571.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC71525.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 317 Score = 424 bits (1091), Expect = e-117, Method: Composition-based stats. Identities = 228/304 (75%), Positives = 264/304 (86%) Query: 4 PTSAAQPPATQPAATPVSGPQRSAARRNRAAFWFLAPACVMTLVYVLYPILYTIYLSFFS 63 P S Q P AA GP +A R+ +AA FLAPAC M VYV++PIL +I+LSF++ Sbjct: 14 PPSQPQAPPLPRAAGSRRGPSPTARRQRKAALLFLAPACFMVAVYVVWPILSSIWLSFYN 73 Query: 64 WDGMTAPKYVGLANYIELFHAPTFYTALKNNVLWLLMFLLAPPMGLAIALYLNQKVAGMR 123 WDGMT +VGLANYIELF APTFYTALKNN++WL++FLLAPPMGLA+ALYLNQ V+G+R Sbjct: 74 WDGMTDKVFVGLANYIELFQAPTFYTALKNNLIWLVLFLLAPPMGLAVALYLNQAVSGIR 133 Query: 124 VVKSLFFAPFVLSGVVVGLIYSWFYDPSFGLLSLILGQGVPVLGDARYATFGIIFAALWP 183 VVKSLFFAPFVLSGVVVGLI+SWFYDP+FGL ++ILG GVPVLGDA YATFGIIFAALWP Sbjct: 134 VVKSLFFAPFVLSGVVVGLIFSWFYDPTFGLFAVILGHGVPVLGDAHYATFGIIFAALWP 193 Query: 184 QTAYCMILFLTGLTALNHDQVEAARMEGAKGWSMLRYVILPQLRSTTFMAFVVSIIGALR 243 QTAYCMIL+LTGLT+LN +Q+EAARMEGAKGW+ML +V+LPQLR TFMA VV++IGALR Sbjct: 194 QTAYCMILYLTGLTSLNSEQLEAARMEGAKGWAMLWHVVLPQLRPVTFMAIVVTVIGALR 253 Query: 244 SFDLISVMTSGGPYESSTVLAYYAYDQAIKYYRQGYSAAVAVTLFAIMLVYIIYQLRRML 303 SFDLISVMT GGP+ESSTVLAYY YDQAIKYYR GYSA++AV LFAIMLVYI+Y LRRML Sbjct: 254 SFDLISVMTGGGPFESSTVLAYYMYDQAIKYYRIGYSASIAVVLFAIMLVYIVYHLRRML 313 Query: 304 RDER 307 R+E+ Sbjct: 314 RNEQ 317