BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0425.p (498 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773703.1| outer membrane channel lipoprotein [Herbaspi... 610 e-172 ref|ZP_06842903.1| RND efflux system, outer membrane lipoprotein... 383 e-104 ref|YP_003907146.1| RND efflux system, outer membrane lipoprotei... 375 e-102 ref|ZP_02886360.1| RND efflux system, outer membrane lipoprotein... 375 e-101 ref|YP_001895917.1| NodT family RND efflux system outer membrane... 375 e-101 >ref|YP_003773703.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] gb|ADJ61795.1| outer membrane channel lipoprotein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 610 bits (1574), Expect = e-172, Method: Composition-based stats. Identities = 435/475 (91%), Positives = 460/475 (96%) Query: 24 SGCALGPTGETPAMPQPVHYAAEATPATLGPQEARQTFVLGQRSVPQWWRAFGSADLSAW 83 SGCA GPTGE PAMP+P HYAA+ATPA +GP+ ARQ FVLGQR+VPQWW+A+GS +LSAW Sbjct: 19 SGCAFGPTGEAPAMPRPDHYAAQATPADVGPEGARQRFVLGQRAVPQWWQAYGSPELSAW 78 Query: 84 VEEALRSNHSLAEADRNLASARLQLRAQIDESLWPTIDAVGQAQRQRALGLPNLGPTTNL 143 VEEALR+NHSLA+A+RNLASARLQLRAQID+SLWP++DAVGQAQRQRALGLPN+GPTTNL Sbjct: 79 VEEALRNNHSLAQAERNLASARLQLRAQIDQSLWPSVDAVGQAQRQRALGLPNIGPTTNL 138 Query: 144 YNVFAGQIRASYTFDLFGVERFANSALAAQVDAQSYQFDAARRTVAASVVISAINAASLR 203 YNVFAGQIRASYTFDLFG ER+AN+A AAQVDAQSYQFDAARR + A+VVISAINAA+LR Sbjct: 139 YNVFAGQIRASYTFDLFGTERYANAATAAQVDAQSYQFDAARRALVANVVISAINAAALR 198 Query: 204 AQVAQTERLVALADADASEVQRRAELGAASQDDLLAARANAQSLRASLPALQAQWLAARH 263 QV+ TERLVALA+ADASEVQRRAELGAASQDDLLAARANAQSLRASLP LQAQWLAARH Sbjct: 199 VQVSDTERLVALAEADASEVQRRAELGAASQDDLLAARANAQSLRASLPGLQAQWLAARH 258 Query: 264 ALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAALKVAAAQQALA 323 ALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAALKVAAAQQA A Sbjct: 259 ALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAALKVAAAQQAQA 318 Query: 324 TAEMFPSLSISASFGQSGFSWPKATGAAGAVWGLGASLTQPLFHGGALRSMSEAAEQAYL 383 TAEMFPSLSISASFGQSGF+WPKATGAAGAVWGLGASLTQPLFHGGALRSMSEAAEQAYL Sbjct: 319 TAEMFPSLSISASFGQSGFTWPKATGAAGAVWGLGASLTQPLFHGGALRSMSEAAEQAYL 378 Query: 384 AAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQATEQGWRNAQRRVALGAVPIS 443 AAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQA+EQGWRNAQRRVALGAVPIS Sbjct: 379 AAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQASEQGWRNAQRRVALGAVPIS 438 Query: 444 AARSGERQYLNAHLSEARATASRLNATATLFQAMGVSLEAAPATSPSTAPQAAQP 498 AARSGERQYLNAHLSEARATASRLNATATLFQAMGVSLEAAPATSP+TAPQAAQP Sbjct: 439 AARSGERQYLNAHLSEARATASRLNATATLFQAMGVSLEAAPATSPTTAPQAAQP 493 >ref|ZP_06842903.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] gb|EFG69357.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. Ch1-1] Length = 517 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 266/460 (57%), Positives = 332/460 (72%), Gaps = 1/460 (0%) Query: 20 ALLLSGCALGPTGETPAMPQPVHYAAEATPATLGP-QEARQTFVLGQRSVPQWWRAFGSA 78 A L+ C+ GP GE PAMPQP HY AEA P P Q Q FV+G + VP+WW+ + S Sbjct: 19 ACALAACSFGPGGEPPAMPQPAHYGAEAQPTQTVPAQGVTQQFVVGAKPVPEWWKLYQSD 78 Query: 79 DLSAWVEEALRSNHSLAEADRNLASARLQLRAQIDESLWPTIDAVGQAQRQRALGLPNLG 138 L+A V+E LR++ +LA D++LA+AR QLRAQI S+ PTIDA GQA R RAL +P +G Sbjct: 79 TLNALVDEGLRNSPTLAATDKSLAAAREQLRAQIGSSMLPTIDAGGQATRNRALAIPEIG 138 Query: 139 PTTNLYNVFAGQIRASYTFDLFGVERFANSALAAQVDAQSYQFDAARRTVAASVVISAIN 198 P T LYNVF GQ++A YTFDLFG R A++ALAA+VD Q+YQFDAARR +AA+VV +AI Sbjct: 139 PNTFLYNVFVGQLQAHYTFDLFGAARLADAALAARVDVQAYQFDAARRALAANVVTAAIT 198 Query: 199 AASLRAQVAQTERLVALADADASEVQRRAELGAASQDDLLAARANAQSLRASLPALQAQW 258 +A+L AQ+ TERLV +A+ A + QRR LGA S D L+A+ +A SL ASLP L+ QW Sbjct: 199 SAALHAQIETTERLVTIANDQARDTQRRYVLGAVSHADQLSAQQSAASLSASLPGLKQQW 258 Query: 259 LAARHALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAALKVAAA 318 L+ RHALAVL+GRTPD AP DL+LA L +P +VP+ VPSELLR RPDI AADAALK AAA Sbjct: 259 LSTRHALAVLLGRTPDLAPDDLELAQLHVPEQVPVVVPSELLRARPDIQAADAALKAAAA 318 Query: 319 QQALATAEMFPSLSISASFGQSGFSWPKATGAAGAVWGLGASLTQPLFHGGALRSMSEAA 378 +ATA+MFPSLS+SAS GQ GFSWP A AGA+W +GASL+QPLFHGGAL + AA Sbjct: 319 DVGVATAQMFPSLSLSASMGQGGFSWPVALSGAGAIWSIGASLSQPLFHGGALFAQRRAA 378 Query: 379 EQAYLAAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQATEQGWRNAQRRVALG 438 Y A + Y+QTVL AFQNVAD+L AL HD+ A AA A ++ + + R LG Sbjct: 379 VDTYDATVSQYKQTVLAAFQNVADTLAALEHDSQALDAANIAARSAQGVFDETSGRYRLG 438 Query: 439 AVPISAARSGERQYLNAHLSEARATASRLNATATLFQAMG 478 A+P+++ RS E+Q+ NA L E R T++RL TA LFQAMG Sbjct: 439 ALPVASTRSSEQQFRNAQLDEIRYTSARLTDTAALFQAMG 478 >ref|YP_003907146.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] gb|ADN57855.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia sp. CCGE1003] Length = 549 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 265/463 (57%), Positives = 335/463 (72%), Gaps = 1/463 (0%) Query: 17 LAAALLLSGCALGPTGETPAMPQPVHYAAEATPA-TLGPQEARQTFVLGQRSVPQWWRAF 75 +A A +L+ C+ GP+GE PA+PQPVHY +EA PA T+ Q Q F++G + VPQWW+ + Sbjct: 56 VACAWMLAACSFGPSGEPPALPQPVHYGSEAQPAQTVAAQGVAQQFMVGAKPVPQWWKLY 115 Query: 76 GSADLSAWVEEALRSNHSLAEADRNLASARLQLRAQIDESLWPTIDAVGQAQRQRALGLP 135 S L+A V+E LR++ +LA ++ LA+AR QLRAQI SL PTIDA GQA R RAL +P Sbjct: 116 QSDALNALVDEGLRNSPTLAATEQTLAAAREQLRAQIGSSLLPTIDAGGQATRNRALAIP 175 Query: 136 NLGPTTNLYNVFAGQIRASYTFDLFGVERFANSALAAQVDAQSYQFDAARRTVAASVVIS 195 +G T LYN+F GQ++A YT DLFG R A++ALAA+V+ Q+YQ DAARR +AA++V + Sbjct: 176 EIGSNTFLYNIFVGQLQAHYTIDLFGAARLADAALAARVNVQAYQLDAARRALAANIVSA 235 Query: 196 AINAASLRAQVAQTERLVALADADASEVQRRAELGAASQDDLLAARANAQSLRASLPALQ 255 AI +A+L AQ+ TERLV LA+ A + QRR LGA S D L+A+ NA SL ASLP L+ Sbjct: 236 AITSAALHAQIDTTERLVTLANDQARDTQRRYALGAVSHADQLSAQQNAASLSASLPGLR 295 Query: 256 AQWLAARHALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAALKV 315 QW RHALAVL+GRTPD AP DL+LASLRLP +VP+ VPSELLR RPDI AADAALK Sbjct: 296 QQWQTTRHALAVLLGRTPDAAPGDLELASLRLPQQVPVVVPSELLRARPDIQAADAALKA 355 Query: 316 AAAQQALATAEMFPSLSISASFGQSGFSWPKATGAAGAVWGLGASLTQPLFHGGALRSMS 375 AAA +ATA+M+PSLS+SAS GQ GFSWP A AGA+W +GASL+QPLFHGGAL + Sbjct: 356 AAADVGVATAQMYPSLSLSASMGQGGFSWPVALSGAGAIWSIGASLSQPLFHGGALVAQR 415 Query: 376 EAAEQAYLAAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQATEQGWRNAQRRV 435 AA Y A + Y+QTVL AFQNVAD+L AL HDA A AA A ++ + + R Sbjct: 416 RAAMNTYEATVSQYKQTVLAAFQNVADTLAALEHDAQALDAANTAARSAQGIFDEIAARY 475 Query: 436 ALGAVPISAARSGERQYLNAHLSEARATASRLNATATLFQAMG 478 LGAVP+++ R+ E+Q+ NA L E R T++RL TA LFQAMG Sbjct: 476 RLGAVPVASTRASEQQFRNAQLDEIRYTSARLTDTAALFQAMG 518 >ref|ZP_02886360.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia graminis C4D1M] gb|EDT08014.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia graminis C4D1M] Length = 522 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 262/465 (56%), Positives = 330/465 (70%), Gaps = 1/465 (0%) Query: 15 LALAAALLLSGCALGPTGETPAMPQPVHYAAEATPA-TLGPQEARQTFVLGQRSVPQWWR 73 A A L+GC+ GP GE PAMPQP+HY +EA PA T+ Q Q F++G + VP+WW Sbjct: 30 FTFALAASLAGCSFGPNGEPPAMPQPLHYGSEAQPAQTVAAQGVAQQFMVGGKPVPEWWT 89 Query: 74 AFGSADLSAWVEEALRSNHSLAEADRNLASARLQLRAQIDESLWPTIDAVGQAQRQRALG 133 + S L+A V+E L ++ +LA ++ LA+AR QLRAQI S+ PTIDA GQA R RAL Sbjct: 90 LYRSDALNALVDEGLHNSPTLAATEQTLAAAREQLRAQIGSSMLPTIDAGGQATRNRALA 149 Query: 134 LPNLGPTTNLYNVFAGQIRASYTFDLFGVERFANSALAAQVDAQSYQFDAARRTVAASVV 193 +P +GP T LYN+F GQ++A YT DLFG R A++ALAA+V+ Q+YQ DAARR +AA++V Sbjct: 150 IPEIGPNTFLYNIFVGQLQAHYTIDLFGAARLADAALAARVNVQAYQLDAARRALAANIV 209 Query: 194 ISAINAASLRAQVAQTERLVALADADASEVQRRAELGAASQDDLLAARANAQSLRASLPA 253 +AI +A+LRAQ+ TERLV LA+ A + RR LGA S D L+A+ +A SL ASLP Sbjct: 210 SAAITSAALRAQIDTTERLVTLANDQAHDTARRYALGAVSHADQLSAQQSAASLSASLPG 269 Query: 254 LQAQWLAARHALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQRPDILAADAAL 313 L+ QW RHALAVL+GRTPD AP DL L SL LP +VP+ VPSELLR RPDI AADAAL Sbjct: 270 LRQQWQTTRHALAVLLGRTPDAAPDDLQLVSLHLPEQVPVVVPSELLRARPDIQAADAAL 329 Query: 314 KVAAAQQALATAEMFPSLSISASFGQSGFSWPKATGAAGAVWGLGASLTQPLFHGGALRS 373 K AAA +ATA+M+PSLS+SAS GQ GFSWP A AGA+W +GASL+QPLFHGGAL + Sbjct: 330 KAAAADVGVATAQMYPSLSLSASMGQGGFSWPVALSGAGAIWSIGASLSQPLFHGGALMA 389 Query: 374 MSEAAEQAYLAAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQATEQGWRNAQR 433 AA Y A + Y+QTVL AFQNVAD+L AL HDA A AA+ A ++ + + Sbjct: 390 QRRAAMNTYEATVSQYKQTVLAAFQNVADTLAALEHDAQALDAASTAARSAQGVFDETSA 449 Query: 434 RVALGAVPISAARSGERQYLNAHLSEARATASRLNATATLFQAMG 478 R LGAVP+S+ R+ E+Q+ NA L E R T++RL TA LFQAMG Sbjct: 450 RYRLGAVPVSSTRTSEQQFRNAQLDEIRYTSARLTDTAALFQAMG 494 >ref|YP_001895917.1| NodT family RND efflux system outer membrane lipoprotein [Burkholderia phytofirmans PsJN] gb|ACD16693.1| RND efflux system, outer membrane lipoprotein, NodT family [Burkholderia phytofirmans PsJN] Length = 511 Score = 375 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 267/475 (56%), Positives = 340/475 (71%), Gaps = 2/475 (0%) Query: 6 LMFAPQARPLALAA-ALLLSGCALGPTGETPAMPQPVHYAAEATPATLGP-QEARQTFVL 63 +F+ +R AL A L+ C+ GP+GE PAMPQP HY A+A P P Q Q FV+ Sbjct: 4 FIFSRYSRGAALTGMACALAACSFGPSGEPPAMPQPAHYGAQAQPTQTVPAQGVTQQFVV 63 Query: 64 GQRSVPQWWRAFGSADLSAWVEEALRSNHSLAEADRNLASARLQLRAQIDESLWPTIDAV 123 G + VP+WW+ + S L+A V+E LR++ +LA D++LA+AR QLRAQI S+ PT+D Sbjct: 64 GAKPVPEWWKLYRSDALNALVDEGLRNSPTLAATDKSLAAAREQLRAQIGSSMLPTVDLG 123 Query: 124 GQAQRQRALGLPNLGPTTNLYNVFAGQIRASYTFDLFGVERFANSALAAQVDAQSYQFDA 183 GQA R RAL +P GP T LYN+F GQ++A YTFDLFG R A++ALAA+V+ Q+YQFDA Sbjct: 124 GQATRNRALAIPEAGPNTFLYNIFVGQLQAHYTFDLFGAARLADAALAARVNVQAYQFDA 183 Query: 184 ARRTVAASVVISAINAASLRAQVAQTERLVALADADASEVQRRAELGAASQDDLLAARAN 243 ARR +AA++V +AI +A+L AQ+ TERLV +A+ A + QRR LGA S D L+A+ + Sbjct: 184 ARRALAANIVTAAITSAALHAQIETTERLVTIANDQARDTQRRYALGAVSHADQLSAQQS 243 Query: 244 AQSLRASLPALQAQWLAARHALAVLMGRTPDQAPADLDLASLRLPAEVPLAVPSELLRQR 303 A SL ASLP L+ QWL+ RHALAVL+GRTPD AP DL+LA LR+P +VP+ VPSELLR R Sbjct: 244 AASLSASLPGLKQQWLSTRHALAVLLGRTPDAAPDDLELAQLRVPEQVPVVVPSELLRAR 303 Query: 304 PDILAADAALKVAAAQQALATAEMFPSLSISASFGQSGFSWPKATGAAGAVWGLGASLTQ 363 PDI AADAALK AAA +ATA+MFPSLS+SAS GQ GFSWP A AGA+W +GASL+Q Sbjct: 304 PDIQAADAALKAAAADVGVATAQMFPSLSLSASMGQGGFSWPVALSGAGAIWSIGASLSQ 363 Query: 364 PLFHGGALRSMSEAAEQAYLAAEANYRQTVLNAFQNVADSLVALSHDADAQTAAAAARQA 423 PLFHGGAL + AA Y A + Y+QTVL AFQNVAD+L AL HD+ A AA A ++ Sbjct: 364 PLFHGGALFAQRRAAVDTYDATVSQYKQTVLAAFQNVADTLAALEHDSQALDAANIAARS 423 Query: 424 TEQGWRNAQRRVALGAVPISAARSGERQYLNAHLSEARATASRLNATATLFQAMG 478 + + R LGA+PI++ARS E+Q+ NA L E R T++RL TA LFQAMG Sbjct: 424 AQGIFDETSGRYRLGALPIASARSSEQQFRNAQLDEIRYTSARLTDTAALFQAMG 478