BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0423.p (462 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773701.1| transport/efflux transmembrane protein [Herb... 468 e-129 ref|YP_001119522.1| RND family efflux transporter MFP subunit [B... 318 9e-85 ref|YP_003907144.1| efflux transporter RND family, MFP subunit [... 317 4e-84 ref|ZP_06842901.1| efflux transporter, RND family, MFP subunit [... 308 1e-81 ref|YP_002911462.1| RND family efflux transporter MFP subunit [B... 307 3e-81 >ref|YP_003773701.1| transport/efflux transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ61793.1| transport/efflux transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 376 Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats. Identities = 299/382 (78%), Positives = 329/382 (86%), Gaps = 7/382 (1%) Query: 81 RPCSGRLSTSLSAPRRVPLARMALLAIPFTLLLSACSKPAPVADAPREVVVLQAQERGST 140 +P S +S + R PL + + L+ACSKPAPVADAPREVVVLQAQ+RG Sbjct: 2 KPVSPSVSPGRARRRVYPL-------LALVITLAACSKPAPVADAPREVVVLQAQQRGQA 54 Query: 141 RPLHLPAEVQSRYVTSLSFRVAGQLVERRVHLGDAVRKGQVLARLDPSDADQNAVSARAE 200 LHLPAEVQSRYVTS+SFR+AGQL ERRVHLGD VRKGQVLARLDP+DA+QNA +A+AE Sbjct: 55 GTLHLPAEVQSRYVTSMSFRIAGQLAERRVHLGDVVRKGQVLARLDPADANQNASAAQAE 114 Query: 201 LASARQHLDAAQKQLQRDTAQAAEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQR 260 LASARQHLDAA+KQLQRD QA E LIS QQLEQSQDAHAAALSQFKAAQARA+VAGNQR Sbjct: 115 LASARQHLDAAEKQLQRDVQQAREALISPQQLEQSQDAHAAALSQFKAAQARAAVAGNQR 174 Query: 261 DYTTLVAQHDGVISAEQANTGDVLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAE 320 DYTTLVAQHDGVISAEQANTGDVL+ GQPVYSLAWSG VDVVT+VADRQ+A LQPGAAA Sbjct: 175 DYTTLVAQHDGVISAEQANTGDVLAAGQPVYSLAWSGQVDVVTEVADRQVATLQPGAAAV 234 Query: 321 VTLAALPGKTYKGRVREVSPAADPQSRTFRIKVTLEQPDASVRLGMTGEVKITPADTAQG 380 VTLAALPGKT+ G+VREVSPAAD QSRT+R+KVTLEQPD +VRLGMTGEV ITPA ++ Sbjct: 235 VTLAALPGKTFTGKVREVSPAADAQSRTYRVKVTLEQPDPAVRLGMTGEVAITPAASSAA 294 Query: 381 QVLMLPATALFHQGGKPAVWVVTNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGV 440 VL+LPATALFHQG +PA+WVV G+LELRPVTVAAYGERSIS+SQGV DKVVVQGV Sbjct: 295 PVLLLPATALFHQGDRPALWVVGEQGQLELRPVTVAAYGERSISVSQGVTASDKVVVQGV 354 Query: 441 HTLTVGEKVKPVAPLHAEDFAL 462 HTLT GEKVKPVAPLHAEDFAL Sbjct: 355 HTLTAGEKVKPVAPLHAEDFAL 376 >ref|YP_001119522.1| RND family efflux transporter MFP subunit [Burkholderia vietnamiensis G4] gb|ABO54687.1| efflux transporter, RND family, MFP subunit [Burkholderia vietnamiensis G4] Length = 369 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 193/361 (53%), Positives = 256/361 (70%), Gaps = 2/361 (0%) Query: 103 ALLAIPFTLLLSACSKPAPVADAPREVVVLQAQERGSTRPLHLPAEVQSRYVTSLSFRVA 162 A L + L+L+AC A APR VV L A G+ LP E+Q RY T LSFR+A Sbjct: 8 AALLVGAALVLAACHPKEAAAPAPRPVVTLTAHADGAAVAATLPGEIQPRYATPLSFRIA 67 Query: 163 GQLVERRVHLGDAVRKGQVLARLDPSDADQNAVSARAELASARQHLDAAQKQLQRDTAQA 222 G+++ER+V LGD V+ GQ++A LDPSD ++N SA+A+L +A A++QL RD AQA Sbjct: 68 GKIIERKVRLGDMVKAGQIVALLDPSDVEKNVASAQAQLDAASHTYAFAKQQLDRDRAQA 127 Query: 223 AEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLVAQHDGVISAEQANTGD 282 E LI+ QLEQ+++++A+AL+Q AQ + ++A NQ Y TL A H G I+AEQA+TG Sbjct: 128 RENLIATAQLEQTENSYASALAQRDQAQQQLALAKNQLRYATLAADHAGTITAEQADTGQ 187 Query: 283 VLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAEVTLAALPGKTYKGRVREVSPAA 342 +S GQ VY LAWSG VDVV+DV + LA L PG AA VTL +LPG+++ +VRE++PAA Sbjct: 188 NVSAGQAVYQLAWSGDVDVVSDVPETALASLAPGHAASVTLPSLPGRSFTAKVREIAPAA 247 Query: 343 DPQSRTFRIKVTLEQPDASVRLGMTGEVKITPADTAQGQ-VLMLPATALFHQGGKPAVWV 401 DPQSRT+R+K+TL PD +VRLGMT V A A G + LPATALFH G +PAVWV Sbjct: 248 DPQSRTYRVKLTLASPDPAVRLGMTANVAFDGAPAASGAPTVTLPATALFHDGPRPAVWV 307 Query: 402 V-TNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGVHTLTVGEKVKPVAPLHAEDF 460 V + + LELR V VA +GER++++S+G+ ++VVVQGVHT++ GEKV+PVAPLHAEDF Sbjct: 308 VRSGNDTLELRRVDVARFGERTVTVSRGLQPGERVVVQGVHTVSAGEKVRPVAPLHAEDF 367 Query: 461 A 461 A Sbjct: 368 A 368 >ref|YP_003907144.1| efflux transporter RND family, MFP subunit [Burkholderia sp. CCGE1003] gb|ADN57853.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. CCGE1003] Length = 398 Score = 317 bits (811), Expect = 4e-84, Method: Composition-based stats. Identities = 211/383 (55%), Positives = 267/383 (69%), Gaps = 10/383 (2%) Query: 88 STSLSAPRRVPLARMALLAIPFTLLLSACSKPAPVADAPREVVVLQAQERGSTRPL-HLP 146 S L+ PRR P LA + L+ACSK A PR VV + G+T P+ LP Sbjct: 16 SGRLARPRR-PRDAALALAFAAVVGLNACSKKEAAAPEPRPVVAVAVHADGNTAPVTSLP 74 Query: 147 AEVQSRYVTSLSFRVAGQLVERRVHLGDAVRKGQVLARLDPSDADQNAVSARAELASARQ 206 EVQ+RY T LSFRV G+++ERRV LGD V+ GQ++ARLDP+DA +NA SA+A+LA+A Sbjct: 75 GEVQARYSTPLSFRVGGKIIERRVRLGDVVKNGQIVARLDPADAQKNAASAQAQLAAAEH 134 Query: 207 HLDAAQKQLQRDTAQAAEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLV 266 A++QL RD AQA E LI+ QLEQ+ +A+A+A +Q A +A++A +Q YTTLV Sbjct: 135 SYRYAKQQLDRDQAQAKENLIAPAQLEQTTNAYASAAAQRDQAAQQAALAKDQLQYTTLV 194 Query: 267 AQHDGVISAEQANTGDVLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAEVTLAAL 326 A H GVI+AEQA+TG +S GQ VY+LAWSG VDVV DV + LAGL PG A+VTL AL Sbjct: 195 ADHAGVITAEQADTGQNVSAGQAVYNLAWSGEVDVVCDVPESALAGLAPGQTAKVTLGAL 254 Query: 327 PGKTYKGRVREVSPAADPQSRTFRIKVTLEQPDASVRLGMTGEVKIT--PADTAQGQ--- 381 PG+T+ RVRE+SPAADPQSRT+R K+TL+ P VRLGMT ++ ++ PA TA G Sbjct: 255 PGRTFTARVRELSPAADPQSRTYRAKLTLDNPGPDVRLGMTADIALSAPPASTASGAEGQ 314 Query: 382 --VLMLPATALFHQGGKPAVWVV-TNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQ 438 +LPATALFH G +PAVWVV D LELR VTVA Y ER+I +SQG+ + VV+Q Sbjct: 315 HGFFVLPATALFHDGPQPAVWVVRAADSALELRRVTVARYNERTIVVSQGLKDGEHVVLQ 374 Query: 439 GVHTLTVGEKVKPVAPLHAEDFA 461 GVHT++ GEKV+ VAPLH EDFA Sbjct: 375 GVHTVSAGEKVRAVAPLHPEDFA 397 >ref|ZP_06842901.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. Ch1-1] gb|EFG69355.1| efflux transporter, RND family, MFP subunit [Burkholderia sp. Ch1-1] Length = 383 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 195/363 (53%), Positives = 258/363 (71%), Gaps = 5/363 (1%) Query: 104 LLAIPFTLLLSACSKPAPVADAPREVVVLQAQERGS-TRPLHLPAEVQSRYVTSLSFRVA 162 +L + + L+ACSK A PR VV + GS T+ LP EVQ+RY T LSFRV Sbjct: 20 VLVLAGVVTLAACSKKEAAAPEPRPVVAVAVHADGSATQAASLPGEVQARYSTPLSFRVG 79 Query: 163 GQLVERRVHLGDAVRKGQVLARLDPSDADQNAVSARAELASARQHLDAAQKQLQRDTAQA 222 G+++ERRV LGD V+ GQ++ARLDP+DA +NA SA+A+LA+A+ L A++QL RD AQA Sbjct: 80 GKIIERRVRLGDVVKNGQIVARLDPADAQKNAASAQAQLAAAQHALVYAKQQLDRDQAQA 139 Query: 223 AEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLVAQHDGVISAEQANTGD 282 E LI+ QLEQ+ +A+A+A++Q A +A+++ +Q YTTL A H GVI+AEQA+TG Sbjct: 140 KENLIAPAQLEQTTNAYASAVAQRDQAAQQAALSKDQLQYTTLAADHAGVITAEQADTGQ 199 Query: 283 VLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAEVTLAALPGKTYKGRVREVSPAA 342 +S GQ VY+LAWSG +DVV DV + LA L G A VTLAALPG+ + RVRE+SPAA Sbjct: 200 NVSAGQAVYNLAWSGDIDVVCDVPENALAALSVGQTASVTLAALPGRKFAARVRELSPAA 259 Query: 343 DPQSRTFRIKVTLEQPDASVRLGMTGEVKI-TPADTAQGQ--VLMLPATALFHQGGKPAV 399 DPQSRT+R K+TL+ P VRLGMT ++++ T A + GQ + +PATALFH G +PAV Sbjct: 260 DPQSRTYRAKLTLDNPGPDVRLGMTADIELATQASASAGQHGLFTVPATALFHDGTQPAV 319 Query: 400 WVV-TNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGVHTLTVGEKVKPVAPLHAE 458 W+V D LELR VTV Y ER+I + QG+ ++VV+QGVHT+T GEKV+ +APLH E Sbjct: 320 WIVRAADNALELRRVTVTRYNERTIVIGQGLKDGERVVLQGVHTVTAGEKVRAIAPLHPE 379 Query: 459 DFA 461 DFA Sbjct: 380 DFA 382 >ref|YP_002911462.1| RND family efflux transporter MFP subunit [Burkholderia glumae BGR1] gb|ACR28758.1| RND family efflux transporter MFP subunit [Burkholderia glumae BGR1] Length = 367 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 194/360 (53%), Positives = 251/360 (69%), Gaps = 2/360 (0%) Query: 103 ALLAIPFTLLLSACSKPAPVAD-APREVVVLQAQERGSTRPLHLPAEVQSRYVTSLSFRV 161 A+L + LL++AC A APR VV G+T LP +V+ RY T LSFR+ Sbjct: 8 AVLVVGAALLVAACHPGGDGAPPAPRPVVATPVAADGATVATTLPGDVEPRYATPLSFRI 67 Query: 162 AGQLVERRVHLGDAVRKGQVLARLDPSDADQNAVSARAELASARQHLDAAQKQLQRDTAQ 221 AG++VER V LGD V+KGQ +ARLDPSDA++NA SA+A+ +A AQ+QL RD AQ Sbjct: 68 AGKIVERSVRLGDTVKKGQAVARLDPSDAEKNAASAQAQYDAAAHAFSYAQQQLDRDRAQ 127 Query: 222 AAEQLISAQQLEQSQDAHAAALSQFKAAQARASVAGNQRDYTTLVAQHDGVISAEQANTG 281 A E LI+ QLEQ+++A+A+A +Q A + ++A NQ YTTLVA H G I+AEQA+TG Sbjct: 128 ARENLIAPAQLEQTENAYASARAQRDQAAQQLALARNQLQYTTLVADHAGYITAEQADTG 187 Query: 282 DVLSPGQPVYSLAWSGAVDVVTDVADRQLAGLQPGAAAEVTLAALPGKTYKGRVREVSPA 341 ++ GQ VY LAWSG VD+VTDV + LA LQPG AA VTL ALP + ++ RVRE++PA Sbjct: 188 QNVAAGQAVYQLAWSGDVDIVTDVPEATLALLQPGHAATVTLPALPQRRFEARVREIAPA 247 Query: 342 ADPQSRTFRIKVTLEQPDASVRLGMTGEVKITPADTAQGQVLMLPATALFHQGGKPAVWV 401 ADPQSRT+R+++TL PD +VRLGMT +V + A + LP+TALFH G PAVWV Sbjct: 248 ADPQSRTYRVRLTLSHPDPAVRLGMTADVALAGAAADGAR-YTLPSTALFHDGAAPAVWV 306 Query: 402 VTNDGKLELRPVTVAAYGERSISLSQGVATQDKVVVQGVHTLTVGEKVKPVAPLHAEDFA 461 V D LELR VTV YGE S+++SQG+ ++VV QGVHT++ GEKV+ VAPLHAED A Sbjct: 307 VRPDDTLELRRVTVVRYGESSVTVSQGLRAGERVVQQGVHTVSAGEKVRAVAPLHAEDTA 366