BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0422.p (290 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773700.1| transcription regulator protein [Herbaspiril... 326 2e-87 ref|ZP_06842900.1| transcriptional regulator, TetR family [Burkh... 182 6e-44 ref|YP_559049.1| TetR family transcriptional regulator [Burkhold... 182 7e-44 ref|YP_003605281.1| transcriptional regulator, TetR family [Burk... 178 7e-43 ref|YP_001895914.1| TetR family transcriptional regulator [Burkh... 178 1e-42 >ref|YP_003773700.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61792.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 221 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 172/198 (86%), Positives = 180/198 (90%) Query: 75 MTRQRLSREQSREQTRERLLEAAHAVFMQKGYAQASVEDISTAAGYSRGAFYSNFDDKEQ 134 MTRQRLSREQSREQTRERLLEAAHAVFMQKG+A ASVEDISTAAGYSRGAFYSNFDDK Q Sbjct: 1 MTRQRLSREQSREQTRERLLEAAHAVFMQKGFALASVEDISTAAGYSRGAFYSNFDDKTQ 60 Query: 135 LFFELLRREGESIDRGFERILGGELTDPDTLRDALAVQYSALYRDDKCSLLWMEARIIAL 194 LFFELLRREGESIDRGF+RIL +TD L D LA QYS LYRDDKCSLLWMEARI+AL Sbjct: 61 LFFELLRREGESIDRGFQRILEAPMTDAAVLEDELAAQYSRLYRDDKCSLLWMEARIVAL 120 Query: 195 RDEKFRAQLDTFLEQRYGQITRFVEAYCRLTGTAPAAPPREIAIGLMALCEGVSFSYRCV 254 RDEKFRAQLD FLE+RY QIT FVEAY +LTGT +APPREIAIGLMALCEGVSFSYRCV Sbjct: 121 RDEKFRAQLDGFLEERYRQITGFVEAYGQLTGTTLSAPPREIAIGLMALCEGVSFSYRCV 180 Query: 255 PHIVDGKTAESVLAWFLK 272 PHIVDGKTAESVL+WFLK Sbjct: 181 PHIVDGKTAESVLSWFLK 198 >ref|ZP_06842900.1| transcriptional regulator, TetR family [Burkholderia sp. Ch1-1] gb|EFG69354.1| transcriptional regulator, TetR family [Burkholderia sp. Ch1-1] Length = 205 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 133/197 (67%), Gaps = 1/197 (0%) Query: 75 MTRQRLSREQSREQTRERLLEAAHAVFMQKGYAQASVEDISTAAGYSRGAFYSNFDDKEQ 134 M RQRL+REQS++QTRERLL+AA A+FM+KG+ ASVEDI+ AAGY+RGAFYSNF K + Sbjct: 1 MKRQRLTREQSKDQTRERLLDAAQAIFMKKGFVAASVEDIAAAAGYTRGAFYSNFRSKSE 60 Query: 135 LFFELLRREGESIDRGFERILGGELTDPDTLRDALAVQYSALYRDDKCSLLWMEARIIAL 194 LF ELLRR+ E + G + I + + + + + YS L+R++KC LLW+EA+++A+ Sbjct: 61 LFLELLRRDHEVMQAGLQAIFANAASR-EEMEERVLRYYSNLHRENKCFLLWVEAKLLAV 119 Query: 195 RDEKFRAQLDTFLEQRYGQITRFVEAYCRLTGTAPAAPPREIAIGLMALCEGVSFSYRCV 254 RD +FR + + F+ ++ Q++ ++ + GT PP +AIGLM LC+GV F Y Sbjct: 120 RDGRFRMRFNAFMHEKLEQLSAYIREFSARVGTPMPMPPETLAIGLMGLCDGVQFFYTVD 179 Query: 255 PHIVDGKTAESVLAWFL 271 P V + AE VLA F Sbjct: 180 PQNVPAEMAEKVLAGFF 196 >ref|YP_559049.1| TetR family transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE30997.1| transcriptional regulator, TetR family [Burkholderia xenovorans LB400] Length = 205 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 93/197 (47%), Positives = 133/197 (67%), Gaps = 1/197 (0%) Query: 75 MTRQRLSREQSREQTRERLLEAAHAVFMQKGYAQASVEDISTAAGYSRGAFYSNFDDKEQ 134 M RQRL+REQS++QTRERLL+AA A+FM+KG+ ASVEDI+ AAGY+RGAFYSNF K + Sbjct: 1 MKRQRLTREQSKDQTRERLLDAAQAIFMKKGFVAASVEDIAAAAGYTRGAFYSNFRSKSE 60 Query: 135 LFFELLRREGESIDRGFERILGGELTDPDTLRDALAVQYSALYRDDKCSLLWMEARIIAL 194 LF ELLRR+ E + G + I + + + + + YS L+R++KC LLW+EA+++A+ Sbjct: 61 LFLELLRRDHEVMQAGLQAIFANAASR-EEMEERVLRYYSNLHRENKCFLLWVEAKLLAV 119 Query: 195 RDEKFRAQLDTFLEQRYGQITRFVEAYCRLTGTAPAAPPREIAIGLMALCEGVSFSYRCV 254 RD +FR + + F+ ++ Q++ ++ + GT PP +AIGLM LC+GV F Y Sbjct: 120 RDGRFRMRFNAFMHEKLEQLSAYIREFSARVGTPMLMPPETLAIGLMGLCDGVQFFYTVD 179 Query: 255 PHIVDGKTAESVLAWFL 271 P V + AE VLA F Sbjct: 180 PQNVPAEMAEKVLAGFF 196 >ref|YP_003605281.1| transcriptional regulator, TetR family [Burkholderia sp. CCGE1002] gb|ADG15770.1| transcriptional regulator, TetR family [Burkholderia sp. CCGE1002] Length = 205 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 97/201 (48%), Positives = 134/201 (66%), Gaps = 9/201 (4%) Query: 75 MTRQRLSREQSREQTRERLLEAAHAVFMQKGYAQASVEDISTAAGYSRGAFYSNFDDKEQ 134 M RQRL+REQS++QTR RLL+AA A FM+KG+ ASVEDI+ AAGY+RGAFYSNF K + Sbjct: 1 MKRQRLTREQSKDQTRGRLLDAAQATFMKKGFVAASVEDIAAAAGYTRGAFYSNFRSKTE 60 Query: 135 LFFELLRREGESIDRG----FERILGGELTDPDTLRDALAVQYSALYRDDKCSLLWMEAR 190 LF ELLRR+ E++ G FE E + LR YS+L+R++KC LLW+EA+ Sbjct: 61 LFLELLRRDHEAMQAGLHAIFESAASREEMEARVLR-----YYSSLHRENKCFLLWVEAK 115 Query: 191 IIALRDEKFRAQLDTFLEQRYGQITRFVEAYCRLTGTAPAAPPREIAIGLMALCEGVSFS 250 ++A+RD +FR + + F+ ++ Q++ +V + GT + PP ++AIGLM LC+GV F Sbjct: 116 LLAVRDGRFRLRFNAFMHEKIEQLSAYVREFSERVGTPMSMPPEQLAIGLMGLCDGVQFF 175 Query: 251 YRCVPHIVDGKTAESVLAWFL 271 Y P V + AE VLA F Sbjct: 176 YTVDPQNVPTEMAEMVLAGFF 196 >ref|YP_001895914.1| TetR family transcriptional regulator [Burkholderia phytofirmans PsJN] gb|ACD16690.1| transcriptional regulator, TetR family [Burkholderia phytofirmans PsJN] Length = 205 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 91/197 (46%), Positives = 131/197 (66%), Gaps = 1/197 (0%) Query: 75 MTRQRLSREQSREQTRERLLEAAHAVFMQKGYAQASVEDISTAAGYSRGAFYSNFDDKEQ 134 M RQRL+REQS++QTRERLL+AA A+FM+KG+ ASVEDI+ AAGY+RGAFYSNF K + Sbjct: 1 MKRQRLTREQSKDQTRERLLDAAQAIFMKKGFVAASVEDIAAAAGYTRGAFYSNFGSKSE 60 Query: 135 LFFELLRREGESIDRGFERILGGELTDPDTLRDALAVQYSALYRDDKCSLLWMEARIIAL 194 LF ELLRR+ E + G + I + + + + + YS L+R++KC LLW EA+++A+ Sbjct: 61 LFLELLRRDHEVMQAGLQAIFANAASR-EEMEERVLRYYSNLHRENKCFLLWAEAKLLAV 119 Query: 195 RDEKFRAQLDTFLEQRYGQITRFVEAYCRLTGTAPAAPPREIAIGLMALCEGVSFSYRCV 254 RD +FR + + F+ + Q+ ++ + GT PP +AIGLM+LC+G+ F Y Sbjct: 120 RDGRFRIRFNAFMHDKLEQLGVYIREFSARVGTPMLMPPETLAIGLMSLCDGLQFFYTVD 179 Query: 255 PHIVDGKTAESVLAWFL 271 P V + E+VLA F Sbjct: 180 PQNVPAERVEAVLAGFF 196