BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0420.p (476 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003778010.1| transmembrane protein [Herbaspirillum serope... 349 7e-94 ref|YP_003777421.1| transmembrane protein [Herbaspirillum serope... 343 3e-92 ref|YP_003777874.1| transmembrane protein [Herbaspirillum serope... 311 1e-82 ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria ... 279 6e-73 ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMM... 278 1e-72 >ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ66102.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 349 bits (895), Expect = 7e-94, Method: Composition-based stats. Identities = 199/484 (41%), Positives = 291/484 (60%), Gaps = 18/484 (3%) Query: 2 VLMAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQVL 61 VLM + + +YQS+QQ +++A+ +A+N+TLV QR + R+ E LD++ R++ Sbjct: 37 VLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAISRNLEMLSLSLDTLAYRFQH-- 94 Query: 62 HFPVSGSELG-----SFLFTGGQANRYIVETAVLDKHGLLVSSSRSSPALLTNDFSDAPF 116 P+S L ++LF +I AVLD G + SSR ++D + Sbjct: 95 --PLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVSSRLGRGNGAPHYADRAY 152 Query: 117 FQAQQNTDSPAGKLFLSKPIQ--LAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSM 174 F A + DSP L++S+P+Q L + VVVLS+R+++ G+FAGV +M LDLAYFR + Sbjct: 153 FIAHR--DSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFAGVVVMALDLAYFREL 210 Query: 175 LEGVDVGNNGILSIYSRDATVYVRIPYDPAMVGRNLSSA---PMLDSFLKQDSGHFFWKS 231 EG+ +G+ GI+S+YS + Y+R+PY ++GR++S L + L ++ G FF + Sbjct: 211 FEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRLRAMLSEEEGSFFAHA 270 Query: 232 VNDGVERLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTL-AILIIGSILLIFSALSFFRSM 290 NDGV RLY F +PG+ L+VFVGYA+ I+ W+KT A+L+ +I + +A Sbjct: 271 TNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSLAIFGLLTAWLLLHVR 330 Query: 291 QSEFLRRHASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDF 350 Q E RR +E+ L LA DGLT L+NRR++DE ++ W+ + SV+FIDVD+ Sbjct: 331 Q-ELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRNLGASFSVLFIDVDY 389 Query: 351 FKLYNDGYGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAE 410 FK YND YGH+ GD VL +VAA L L R+ D A RYGGEEFVV+L +D GA +A+ Sbjct: 390 FKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVLLEQTDLQGAQMMAQ 449 Query: 411 RIRAAVEHLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNRV 470 R+ AV + H S +VTIS+GVA + H + E +L AD ALY AK AGR+RV Sbjct: 450 RLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAADAALYRAKQAGRDRV 509 Query: 471 EISS 474 +SS Sbjct: 510 HLSS 513 >ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65513.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 189/483 (39%), Positives = 298/483 (61%), Gaps = 15/483 (3%) Query: 1 MVLMAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQV 60 +++M + + G ++Y+ ++Q + +AI A N+TL++QR + R+ E +D++ RY+ Sbjct: 15 IIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEILSLAMDTLAYRYQHP 74 Query: 61 LHFP-VSGSELGSFLFTGGQANRYIVETAVLDKHGLLVSSSR--SSPALLTNDFSDAPFF 117 L S E ++LF A +I A+LD G + +SR +SP+++ N +S+ +F Sbjct: 75 LDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSASPSVVVN-YSERTYF 133 Query: 118 QAQQNTDSPAGKLFLSKPIQ--LAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSML 175 + DS LF+S+PI+ L + VVVLS+R++ G+F GV +M LD++YFR + Sbjct: 134 TVHR--DSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLMALDMSYFRDLF 191 Query: 176 EGVDVGNNGILSIYSRDATVYVRIPYDPAMVGRNLSSAP---MLDSFLKQDSGHFFWKSV 232 G+ +G +GI+S+YS D Y+R+PY P+ +GR +++ P L + L + G+FF ++ Sbjct: 192 TGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLVDNDGNFFARAH 251 Query: 233 NDGVERLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTLAILIIGSILLIFSALS--FFRSM 290 DGVERLY F +P L+V +G ++ I+ W TL +++ +L+IF+AL+ + Sbjct: 252 TDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLL--LLIIFTALAGVLLMLV 309 Query: 291 QSEFLRRHASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDF 350 + E L+R A+EK L LA DGLTGL+NRRS+DE + WQ + S +FIDVD+ Sbjct: 310 RRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGFSTLFIDVDY 369 Query: 351 FKLYNDGYGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAE 410 FK YND YGH+ GD VL VAA LR L R D A RYGGEEFVV+L +D GA ++A+ Sbjct: 370 FKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTDEHGALRMAQ 429 Query: 411 RIRAAVEHLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNRV 470 ++ A+ + +PH+ S G++++S+GVA + H + E +L AD ALY AK GRNRV Sbjct: 430 QLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYIAKREGRNRV 489 Query: 471 EIS 473 ++ Sbjct: 490 CVA 492 >ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ65966.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 171/472 (36%), Positives = 264/472 (55%), Gaps = 6/472 (1%) Query: 4 MAILLGGGAIYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQVLHF 63 M + +YQSH+Q + AI H ANI + QR + R+ E LDS+ RYR Sbjct: 1 MTATVSCAVLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHTQLH 60 Query: 64 PVSGSELGSFLFTGGQANRYIVETAVLDKHGLLVSSSRSSPALLTNDFSDAPFFQAQQNT 123 + + FL RY+ ++D G LV S + +L ++ + FF A Q Sbjct: 61 EMPLQQKMEFLLGENIEARYVAALGIVDTDGELVVGSAALSQILPGPYAQSDFFTAHQTH 120 Query: 124 DSPAGK-LFLSKP--IQLAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDV 180 + L++S P ++L + VVVLS+R+ G+FAG+++MVL L YFR + +G+ + Sbjct: 121 HAQGDTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGLTL 180 Query: 181 GNNGILSIYSRDATVYVRIPYDPAMVGRNLSSAPMLDSFLKQD---SGHFFWKSVNDGVE 237 N+G++S+YS D Y+RIPY+ A +G L+ + L+ G +F ++ DG Sbjct: 181 ENDGVISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDGPR 240 Query: 238 RLYAFHAVPGTNLVVFVGYAKSNIYNYWQKTLAILIIGSILLIFSALSFFRSMQSEFLRR 297 LY F VPGT VF+G + I+ W L ++ +++ R ++ E RR Sbjct: 241 WLYTFARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQRR 300 Query: 298 HASEKTLTTLATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDG 357 A ++ L LA D LT L+NRR++DE + R W+ E S++F+DVDFFKLYND Sbjct: 301 SALDQQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYNDT 360 Query: 358 YGHQSGDLVLAQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVE 417 YGH++GD L V+ + +++R D + RYGGEEFVV+L G+D GA+ VA+RI +A++ Sbjct: 361 YGHKAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISAIQ 420 Query: 418 HLALPHAHSRFGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNR 469 L +PH S F ++T+S+GV + H+ E ++ +AD ALY AK GRN+ Sbjct: 421 SLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRNK 472 >ref|YP_001807732.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] gb|ACB63516.1| diguanylate cyclase [Burkholderia ambifaria MC40-6] Length = 492 Score = 279 bits (714), Expect = 6e-73, Method: Composition-based stats. Identities = 168/463 (36%), Positives = 266/463 (57%), Gaps = 12/463 (2%) Query: 13 IYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQVLHFPVSGSELGS 72 ++QS A E A + N+ L+ +R ++R+ E + L ++ + ++ + + Sbjct: 30 LFQSRNDALERASETSRNLGLIAERDIERNFELYDLSLQAVIQGLQRPDVMSAAPALRRG 89 Query: 73 FLFTGGQANRYIVETAVLDKHG-LLVSSSRSSPALLTNDFSDAPFFQAQQNTDSPAGKLF 131 LF + +I VLD +G +++ S+ P +F+D +F + D+P L+ Sbjct: 90 VLFDHAMSAPFIGSQLVLDANGDIVLDSANDVPR--KGNFADRKYFTVHR--DNPDVGLY 145 Query: 132 LSKPI--QLAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDVGNNGILSIY 189 +S P +L +VLSRRI++ G+F GVA++ ++L YF + G+ +G +G +S+ Sbjct: 146 VSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALIAINLEYFHQLFAGLSLGQHGSMSLI 205 Query: 190 SRDATVYVRIPYDPAMVGRNLSSAPMLDSFLKQDSGHFFWKSVNDGVERLYAFHAVPGTN 249 +D + +R PY+ ++VGR++S A F + G F + DGV RLY F +P Sbjct: 206 GKDGIMVMRQPYNVSIVGRDISKAATFRRFQRASEGVFSETASIDGVRRLYYFKHLPKLP 265 Query: 250 LVVFVGYAKSNIYNYWQKTLAIL--IIGSILLIFSALSFFRSMQSEFLRRHASEKTLTTL 307 L++ V + ++Y W+ + ++ + + F ALSF S Q RR +E L L Sbjct: 266 LIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIALSFLLSGQ--LRRRMRAESELVLL 323 Query: 308 ATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDGYGHQSGDLVL 367 A DGLTGL NRRS E+++R W+ R T S++F+DVD FK YND YGHQ+GD L Sbjct: 324 ARTDGLTGLNNRRSFGEVLDREWRRARR-THSVFSLLFVDVDRFKAYNDTYGHQAGDDAL 382 Query: 368 AQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVEHLALPHAHSR 427 A VA + ++ R D AARYGGEEFVV+LP + AGA+++AERIRAA++ LAL HA S Sbjct: 383 AAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSE 442 Query: 428 FGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNRV 470 +G VT S+G+A ++ + + ++ AD+ALY AK+ GRNRV Sbjct: 443 YGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTIGRNRV 485 >ref|YP_772914.1| diguanylate cyclase [Burkholderia ambifaria AMMD] gb|ABI86580.1| diguanylate cyclase [Burkholderia ambifaria AMMD] Length = 492 Score = 278 bits (712), Expect = 1e-72, Method: Composition-based stats. Identities = 169/463 (36%), Positives = 265/463 (57%), Gaps = 12/463 (2%) Query: 13 IYQSHQQAKETAIGHAANITLVMQRGLQRHAEFFCSVLDSIGERYRQVLHFPVSGSELGS 72 ++QS A E A + N+ L+ +R ++R+ E + L ++ ++ + + Sbjct: 30 LFQSRNDALERASETSRNLGLMAERDIERNFELYDLSLQAVIHGLQRPDVMSAAPALRRG 89 Query: 73 FLFTGGQANRYIVETAVLDKHG-LLVSSSRSSPALLTNDFSDAPFFQAQQNTDSPAGKLF 131 LF + +I VLD +G +++ SS P +F+D +F + D+P L+ Sbjct: 90 VLFDHAMSAPFIGSQLVLDANGDIVLDSSNDVPR--KGNFADRKYFTVHR--DNPDVGLY 145 Query: 132 LSKPI--QLAKDYFVVVLSRRITDMQGNFAGVAIMVLDLAYFRSMLEGVDVGNNGILSIY 189 +S P +L +VLSRRI++ G+F GVA++ ++L YF + G+ +G +G +S+ Sbjct: 146 VSDPFVSRLRAGMLCIVLSRRISNPDGSFGGVALIAINLEYFHHLFAGLSLGQHGSMSLI 205 Query: 190 SRDATVYVRIPYDPAMVGRNLSSAPMLDSFLKQDSGHFFWKSVNDGVERLYAFHAVPGTN 249 +D + +R PY+ ++VGR++S A F + G F + DGV RLY F +P Sbjct: 206 GKDGIMVMRQPYNVSIVGRDISKATTFRRFQRASEGVFSETASIDGVRRLYYFKHLPKLP 265 Query: 250 LVVFVGYAKSNIYNYWQKTLAIL--IIGSILLIFSALSFFRSMQSEFLRRHASEKTLTTL 307 L++ V + ++Y W+ + ++ + + F ALSF S Q RR +E L L Sbjct: 266 LIIMVAEGEQDVYAAWRHRAVTIGALVATFGVAFIALSFLLSGQ--LRRRMRAESELVLL 323 Query: 308 ATIDGLTGLINRRSMDELMERHWQHLREGTLRQLSVIFIDVDFFKLYNDGYGHQSGDLVL 367 A DGLTGL NRRS E+++R W+ R T S++F+DVD FK YND YGHQ+GD L Sbjct: 324 ARTDGLTGLNNRRSFGEVLDREWRRARR-THSVFSLLFVDVDRFKAYNDTYGHQAGDDAL 382 Query: 368 AQVAAALRTSLARNEDGAARYGGEEFVVILPGSDAAGASKVAERIRAAVEHLALPHAHSR 427 A VA + ++ R D AARYGGEEFVV+LP + AGA+++AERIRAA++ LAL HA S Sbjct: 383 AAVARCIGENIRRPVDTAARYGGEEFVVLLPDTPPAGAAQIAERIRAAIDELALEHAGSE 442 Query: 428 FGMVTISLGVAQADLQRHAQAEQLLAEADQALYAAKSAGRNRV 470 +G VT S+G+A ++ + + ++ AD+ALY AK+ GRNRV Sbjct: 443 YGRVTASIGLASWTPEQDNEPDAVIKAADEALYYAKTIGRNRV 485