BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0417.p         (82 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773696.1| diguanylate cyclase [Herbaspirillum seropedi...   104   4e-21
ref|YP_001567595.1| PAS/PAC sensor-containing diguanylate cyclas...    72   4e-11
ref|YP_435402.1| FOG EAL domain-containing protein [Hahella chej...    70   1e-10
ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with P...    70   2e-10
ref|YP_003672991.1| PAS/PAC and GAF sensor-containing diguanylat...    69   3e-10

>ref|YP_003773696.1| diguanylate cyclase [Herbaspirillum seropedicae SmR1]
 gb|ADJ61788.1| diguanylate cyclase protein [Herbaspirillum seropedicae SmR1]
          Length = 696

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/70 (77%), Positives = 60/70 (85%)

Query: 13  ADQTENQALVSAVLQLAASFGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPARQA 72
           ADQTENQALVSAVLQLA SFGFQVVAEGVES +DL TLQAM CHAMQGYYF+PPMPA QA
Sbjct: 627 ADQTENQALVSAVLQLAGSFGFQVVAEGVESAEDLQTLQAMHCHAMQGYYFAPPMPAAQA 686

Query: 73  CEMVKAQGRS 82
              ++A  ++
Sbjct: 687 RARIEALAQA 696


>ref|YP_001567595.1| PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
           [Petrotoga mobilis SJ95]
 gb|ABX31272.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)
           [Petrotoga mobilis SJ95]
          Length = 684

 Score = 71.6 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 46/63 (73%), Gaps = 1/63 (1%)

Query: 9   DGVAADQTENQALVSAVLQLAASFGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMP 68
           D +  D+T +Q LVS+++ ++ S GF+V+AEGVESE+ L  LQ  GC+ +QGYYFS P+P
Sbjct: 611 DNILHDET-SQRLVSSIISMSKSLGFEVIAEGVESEEQLLFLQEEGCYEVQGYYFSKPLP 669

Query: 69  ARQ 71
             Q
Sbjct: 670 FDQ 672


>ref|YP_435402.1| FOG EAL domain-containing protein [Hahella chejuensis KCTC 2396]
 gb|ABC30977.1| FOG: EAL domain [Hahella chejuensis KCTC 2396]
          Length = 569

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/64 (43%), Positives = 46/64 (71%)

Query: 14  DQTENQALVSAVLQLAASFGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPARQAC 73
           + +++ A+V A+L +A   GF+V+AEG+E+ Q L  L+ +GCH  QG+YFS P+PA  A 
Sbjct: 498 ESSDDIAIVKAILAIAEHMGFKVIAEGIETVQQLEKLRELGCHEAQGFYFSKPVPATIAT 557

Query: 74  EMVK 77
           +M++
Sbjct: 558 DMLR 561


>ref|YP_003524079.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
 gb|ADE11692.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Sideroxydans lithotrophicus ES-1]
          Length = 1149

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/68 (42%), Positives = 47/68 (69%)

Query: 14   DQTENQALVSAVLQLAASFGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPARQAC 73
            D  +++A+V+A++ +A+S G Q +AEGVE+   L  L+  GC+ +QGYYFS P+PA Q  
Sbjct: 1082 DDPDDKAIVAAIINMASSLGMQTIAEGVETAGQLSFLRLQGCNEVQGYYFSKPLPAEQFV 1141

Query: 74   EMVKAQGR 81
              ++ QG+
Sbjct: 1142 SYLQKQGQ 1149


>ref|YP_003672991.1| PAS/PAC and GAF sensor-containing diguanylate
            cyclase/phosphodiesterase [Methylotenera versatilis 301]
 gb|ADI28414.1| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
            [Methylotenera versatilis 301]
          Length = 1026

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/61 (47%), Positives = 44/61 (72%)

Query: 17   ENQALVSAVLQLAASFGFQVVAEGVESEQDLHTLQAMGCHAMQGYYFSPPMPARQACEMV 76
            E++A+VSA++ ++ S G Q +AEGVE+ + L  L+A GC  +QGY++S PMPA QA E  
Sbjct: 961  EDKAIVSAIISMSKSLGLQTIAEGVETVEQLTYLRAQGCDEVQGYFYSKPMPAEQAEEYF 1020

Query: 77   K 77
            +
Sbjct: 1021 R 1021