BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0416.p         (207 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   194   6e-48
ref|ZP_04577366.1| 3-methyl-2-oxobutanoate hydroxymethyltransfer...   155   4e-36
ref|ZP_04579518.1| 3-methyl-2-oxobutanoate hydroxymethyltransfer...   151   5e-35
ref|YP_001100884.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   151   6e-35
ref|YP_004754483.1| 3-methyl-2-oxobutanoate hydroxymethyltransfe...   151   7e-35

>ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62136.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 275

 Score =  194 bits (494), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 100/103 (97%), Positives = 101/103 (98%)

Query: 105 TLLHADALAVQQAGASLVVIEAVPATLGKEVTDRLAIPTIGIGAGPDCSGQVLVMHDMLG 164
           T LHADALAVQQAGASLVVIEAVPATLGKEVTDRL+IPTIGIGAGPDCSGQVLVMHDMLG
Sbjct: 173 TQLHADALAVQQAGASLVVIEAVPATLGKEVTDRLSIPTIGIGAGPDCSGQVLVMHDMLG 232

Query: 165 VFPGHKSRFVRNFMDGASGIEEAVRHYVAAVKDGSFPAQEHCF 207
           VFPGHKSRFVRNFMDGASGIEEAVR YVAAVKDGSFPAQEHCF
Sbjct: 233 VFPGHKSRFVRNFMDGASGIEEAVRRYVAAVKDGSFPAQEHCF 275


>ref|ZP_04577366.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacter
           formigenes HOxBLS]
 gb|EEO28328.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacter
           formigenes HOxBLS]
          Length = 270

 Score =  155 bits (392), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/107 (71%), Positives = 88/107 (82%), Gaps = 2/107 (1%)

Query: 101 DAEETLLHADALAVQQAGASLVVIEAVPATLGKEVTDRLAIPTIGIGAGPDCSGQVLVMH 160
           DA+  L   DA  +Q AGASL V+EAVPA LGKE+T+ L +PTIGIGAGPDCSGQVLVMH
Sbjct: 166 DAKRIL--EDAKILQNAGASLYVLEAVPAILGKEITEALNVPTIGIGAGPDCSGQVLVMH 223

Query: 161 DMLGVFPGHKSRFVRNFMDGASGIEEAVRHYVAAVKDGSFPAQEHCF 207
           DML V+PG K+RFVRNFM+G S IE+A++ YV AVKDGSFPA EHCF
Sbjct: 224 DMLNVYPGRKARFVRNFMEGQSSIEDAIKAYVRAVKDGSFPAPEHCF 270


>ref|ZP_04579518.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacter
           formigenes OXCC13]
 gb|EEO30491.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Oxalobacter
           formigenes OXCC13]
          Length = 270

 Score =  151 bits (382), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 89/107 (83%), Gaps = 2/107 (1%)

Query: 101 DAEETLLHADALAVQQAGASLVVIEAVPATLGKEVTDRLAIPTIGIGAGPDCSGQVLVMH 160
           DAE  +   DA  +Q AGAS+ V+EA+P+ LGK VT+ +++PTIGIGAGPDCSGQVLVMH
Sbjct: 166 DAERII--EDAKILQDAGASIFVLEAIPSQLGKRVTEAISVPTIGIGAGPDCSGQVLVMH 223

Query: 161 DMLGVFPGHKSRFVRNFMDGASGIEEAVRHYVAAVKDGSFPAQEHCF 207
           DML V+PG K+RFVRNFM+G + IE A++ YVAAVKDG+FPA+EHCF
Sbjct: 224 DMLNVYPGKKARFVRNFMEGQTTIEGAIKAYVAAVKDGTFPAEEHCF 270


>ref|YP_001100884.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Herminiimonas
           arsenicoxydans]
 emb|CAL62763.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase (Ketopantoate
           hydroxymethyltransferase) (KPHMT) [Herminiimonas
           arsenicoxydans]
          Length = 276

 Score =  151 bits (381), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/101 (71%), Positives = 87/101 (86%)

Query: 107 LHADALAVQQAGASLVVIEAVPATLGKEVTDRLAIPTIGIGAGPDCSGQVLVMHDMLGVF 166
           L  DALA+Q AGASL+++EA+PA+LGKEVTD L +PTIGIGAGPDCSGQVLVMHD +GVF
Sbjct: 176 LKDDALALQAAGASLLILEAIPASLGKEVTDILTMPTIGIGAGPDCSGQVLVMHDFIGVF 235

Query: 167 PGHKSRFVRNFMDGASGIEEAVRHYVAAVKDGSFPAQEHCF 207
           PG K+RFV+NFM+G + IE AVR Y+  VK+G+FPA EHCF
Sbjct: 236 PGKKARFVKNFMEGQTSIEGAVRAYIREVKEGTFPAPEHCF 276


>ref|YP_004754483.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Collimonas
           fungivorans Ter331]
 gb|AEK63660.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Collimonas
           fungivorans Ter331]
          Length = 278

 Score =  151 bits (381), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 74/101 (73%), Positives = 91/101 (90%)

Query: 107 LHADALAVQQAGASLVVIEAVPATLGKEVTDRLAIPTIGIGAGPDCSGQVLVMHDMLGVF 166
           L ADALA+Q+AGASL+V+EA+PA LGKEV++ L+IPTIGIGAGPDCSGQVLVMHD++GVF
Sbjct: 178 LKADALALQEAGASLLVLEAIPAALGKEVSELLSIPTIGIGAGPDCSGQVLVMHDLMGVF 237

Query: 167 PGHKSRFVRNFMDGASGIEEAVRHYVAAVKDGSFPAQEHCF 207
           PGHK+RFV++FM+G + I+ AV  YV+AVKD SFPA EHCF
Sbjct: 238 PGHKARFVKDFMEGQTSIDAAVLAYVSAVKDKSFPAPEHCF 278