BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0415.p (312 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773610.1| ornithine cyclodeaminase [Herbaspirillum ser... 446 e-123 ref|YP_004754190.1| ornithine cyclodeaminase [Collimonas fungivo... 343 2e-92 ref|ZP_08275995.1| Ornithine cyclodeaminase [Oxalobacteraceae ba... 326 3e-87 ref|ZP_03265140.1| ornithine cyclodeaminase/mu-crystallin [Burkh... 229 3e-58 ref|YP_003910933.1| ornithine cyclodeaminase/mu-crystallin [Burk... 228 9e-58 >ref|YP_003773610.1| ornithine cyclodeaminase [Herbaspirillum seropedicae SmR1] gb|ADJ61702.1| ornithine cyclodeaminase protein [Herbaspirillum seropedicae SmR1] Length = 312 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 270/312 (86%), Positives = 283/312 (90%) Query: 1 MHILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDL 60 MHILD QTAQA+PY+ALVDALARA QELA G IRAPERQVVPIDA SVLLGMPAIA+DL Sbjct: 1 MHILDPRQTAQALPYAALVDALARATQELADGRIRAPERQVVPIDAASVLLGMPAIADDL 60 Query: 61 SVTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLL 120 SVTKLITVH DNARHQLPAIQGEVIAFET TGRRLALMDGPTVTARRTAAMS+LGIRTLL Sbjct: 61 SVTKLITVHADNARHQLPAIQGEVIAFETQTGRRLALMDGPTVTARRTAAMSMLGIRTLL 120 Query: 121 PRTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASP 180 PR PQSALLIGTG Q+AAHADAL E FGVRQFW+ ARDLARTQAFC+A+SERHPQ VASP Sbjct: 121 PRQPQSALLIGTGVQSAAHADALVEFFGVRQFWIVARDLARTQAFCRALSERHPQAVASP 180 Query: 181 LPAQMLQQELPRTDVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRI 240 LPAQMLQQ+LP TDVVIALTTSR AVIPE IAADTLAIGVGAFKPDMVEFPASLLHARRI Sbjct: 181 LPAQMLQQDLPHTDVVIALTTSRSAVIPEHIAADTLAIGVGAFKPDMVEFPASLLHARRI 240 Query: 241 VVDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALPVFKTVGQAAWDL 300 VVDDLAGAHHEAGDLIQA VDW+GVV I DV+AG+ L S ALPVFKTVGQAAWDL Sbjct: 241 VVDDLAGAHHEAGDLIQAGVDWSGVVAIADVVAGRAPAAALASGAALPVFKTVGQAAWDL 300 Query: 301 AAARVMRTTLGI 312 AAARVMR TLG+ Sbjct: 301 AAARVMRATLGL 312 >ref|YP_004754190.1| ornithine cyclodeaminase [Collimonas fungivorans Ter331] gb|AEK63367.1| Ornithine cyclodeaminase [Collimonas fungivorans Ter331] Length = 320 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 202/312 (64%), Positives = 237/312 (75%), Gaps = 5/312 (1%) Query: 1 MHILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDL 60 M ILD+ TA A+PY+ LV AL + AQ+L G I APER VV ID SVLL MPA+A D+ Sbjct: 10 MRILDAESTAAALPYAELVPALVKVAQQLRQGEINAPERMVVEIDKASVLLCMPAVAADI 69 Query: 61 SVTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLL 120 +TKLITVH +NA++QLPAIQGEV+ F+ +GRRLAL+ GPTVTARRTAA+SLLGI LL Sbjct: 70 GMTKLITVHANNAQYQLPAIQGEVVVFDAASGRRLALLHGPTVTARRTAAVSLLGIEALL 129 Query: 121 PRTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASP 180 P P+SA LIGTG QA AHAD LAE FGV +FWVAARDL +TQAFC A+ +RHPQ+ Sbjct: 130 PSKPKSAFLIGTGVQAIAHADGLAEYFGVTEFWVAARDLEKTQAFCAALQQRHPQIAVKA 189 Query: 181 LPAQMLQQELPRTDVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRI 240 + A L +LP TDVVIALTTSR AVIP IAA TLAIGVGAFKPDMVEFPA LLH+R + Sbjct: 190 MAAAALATDLPHTDVVIALTTSRTAVIPVSIAATTLAIGVGAFKPDMVEFPAELLHSRTV 249 Query: 241 VVDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALPVFKTVGQAAWDL 300 VVD LAGA HEAGDL+QA++DW+ V + DVLA + LPV+KTVGQAAWDL Sbjct: 250 VVDCLAGAKHEAGDLLQAQIDWSKVRELPDVLA-----HGFVRQAVLPVYKTVGQAAWDL 304 Query: 301 AAARVMRTTLGI 312 AAARV +L + Sbjct: 305 AAARVAIASLDL 316 >ref|ZP_08275995.1| Ornithine cyclodeaminase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30531.1| Ornithine cyclodeaminase [Oxalobacteraceae bacterium IMCC9480] Length = 307 Score = 326 bits (836), Expect = 3e-87, Method: Composition-based stats. Identities = 198/305 (64%), Positives = 239/305 (78%), Gaps = 7/305 (2%) Query: 1 MHILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDL 60 M D+ QTAQA+PYS LV A+A AA+ELA+G +R+PER VVP+D VLL MPA A D+ Sbjct: 4 MRTFDAGQTAQALPYSRLVPAIAIAARELAAGQLRSPERLVVPLDGGGVLLCMPATASDI 63 Query: 61 SVTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLL 120 VTKL+TVH DNAR LP IQGEV+ F++ TG+RLAL+DGPTVTARRTAA++LLGI+TLL Sbjct: 64 GVTKLVTVHPDNARRALPVIQGEVVVFDSATGQRLALLDGPTVTARRTAAVTLLGIQTLL 123 Query: 121 PRTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASP 180 PR PQSALLIGTG QA AHA+AL + FGV F +AARD+A+ + FC A+ R+PQ+ A+ Sbjct: 124 PRAPQSALLIGTGVQALAHAEALIDFFGVGDFRIAARDVAKAELFCVALRLRYPQITATA 183 Query: 181 LPAQMLQQELPRTDVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRI 240 L + E+P TDV+IALTTSR VIP + A TLAIGVGAFKP+M EFPA+LL AR+I Sbjct: 184 LSSAF--GEVPVTDVLIALTTSRTPVIPAHLDASTLAIGVGAFKPEMAEFPAALLQARQI 241 Query: 241 VVDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALPVFKTVGQAAWDL 300 VVDD+AGA HEAGDLIQA+VDWAGV G+ VL + L ++ LPVFKTVGQAAWDL Sbjct: 242 VVDDVAGAQHEAGDLIQAQVDWAGVRGLASVLEKR-----LPASDLLPVFKTVGQAAWDL 296 Query: 301 AAARV 305 AAARV Sbjct: 297 AAARV 301 >ref|ZP_03265140.1| ornithine cyclodeaminase/mu-crystallin [Burkholderia sp. H160] gb|EEA03218.1| ornithine cyclodeaminase/mu-crystallin [Burkholderia sp. H160] Length = 310 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 154/310 (49%), Positives = 187/310 (60%), Gaps = 10/310 (3%) Query: 2 HILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDLS 61 I D+ TA+ MPY+ALV+AL RA+ + A I +PER VVP++A ++L MPA A DL+ Sbjct: 7 QIFDAAATARLMPYAALVEALRRASVDYAQQRIVSPERLVVPLNAGGMMLSMPATAPDLA 66 Query: 62 VTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLLP 121 + KL+ V N LP I G+V+AF+ DTG L ++DGPTVT RRTAAMS+LGI T Sbjct: 67 IHKLVNVCSSNGARHLPTIHGQVMAFDADTGETLFILDGPTVTGRRTAAMSMLGIATFAG 126 Query: 122 RTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASPL 181 R P+ LLIGTG QA H +A+ E+F + WV AR AFC A + V L Sbjct: 127 RAPREFLLIGTGTQALNHLEAIGELFPDARVWVKGSAPARADAFCAAQRGK----VCELL 182 Query: 182 PAQMLQQELPRT-DVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRI 240 P +P + DVVIALTTS+ V E A+ L IGVGAF P MVE A+ L + Sbjct: 183 PLTEAGVTIPASVDVVIALTTSKQPVYDEAARAERLVIGVGAFTPQMVEIGATTLAGSAL 242 Query: 241 VVDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALPVFKTVGQAAWDL 300 VDD AGA HEAGD IQA VDWA V GI VL V T VFK+VG AAWDL Sbjct: 243 FVDDPAGARHEAGDFIQAGVDWARVGGIAAVLDQTRPVPT-----GPVVFKSVGCAAWDL 297 Query: 301 AAARVMRTTL 310 AA RV R L Sbjct: 298 AACRVARDAL 307 >ref|YP_003910933.1| ornithine cyclodeaminase/mu-crystallin [Burkholderia sp. CCGE1003] gb|ADN61642.1| ornithine cyclodeaminase/mu-crystallin [Burkholderia sp. CCGE1003] Length = 311 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 149/314 (47%), Positives = 187/314 (59%), Gaps = 17/314 (5%) Query: 2 HILDSLQTAQAMPYSALVDALARAAQELASGAIRAPERQVVPIDANSVLLGMPAIAEDLS 61 + D+ TA+ PY+ALVDAL R + + A I +PER VP++ +LL MPA A DL+ Sbjct: 7 QMFDAAATARLTPYAALVDALKRTSIDYAQRRIASPERLGVPLNGGGILLSMPASASDLA 66 Query: 62 VTKLITVHGDNARHQLPAIQGEVIAFETDTGRRLALMDGPTVTARRTAAMSLLGIRTLLP 121 + KL+ V DN LP I G+V+AF+ DTG L ++DGPTVT RRTAAMS+LG+RT Sbjct: 67 IHKLVNVCPDNGLRGLPTIHGQVMAFDADTGETLFILDGPTVTGRRTAAMSMLGVRTFAA 126 Query: 122 RTPQSALLIGTGAQAAAHADALAEVFGVRQFWVAARDLARTQAFCQAISERHPQVVASPL 181 P+ LLIGTG QA H +A+ +++ + WV AR +AFC A + ++ Sbjct: 127 AAPREFLLIGTGTQALNHLEAIGDLYPQARVWVKGSTPARAEAFCAAHRGKAFELRPLTQ 186 Query: 182 PAQMLQQELPRTDVVIALTTSRVAVIPEQIAADTLAIGVGAFKPDMVEFPASLLHARRIV 241 P L + D VIALTTSR AV E A L IGVGAF P+MVE A L + Sbjct: 187 PDAALPDSI---DTVIALTTSRQAVYDEAARAGRLVIGVGAFTPEMVEIGARTLAGSALF 243 Query: 242 VDDLAGAHHEAGDLIQAKVDWAGVVGIGDVLAGKTAVNTLDSAGALP-----VFKTVGQA 296 VDD+AGA HEAGD IQA VDW+GV GI V LD+A P VFK+VG A Sbjct: 244 VDDMAGAKHEAGDFIQAGVDWSGVRGIASV---------LDNAAWAPSQTPVVFKSVGCA 294 Query: 297 AWDLAAARVMRTTL 310 AWDLAA RV R L Sbjct: 295 AWDLAACRVARQAL 308