BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0414.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773609.1| proline racemase [Herbaspirillum seropedicae... 659 0.0 ref|YP_004754191.1| proline racemase [Collimonas fungivorans Ter... 545 e-153 ref|YP_001859545.1| proline racemase [Burkholderia phymatum STM8... 418 e-115 ref|YP_003704518.1| proline racemase [Truepera radiovictrix DSM ... 407 e-111 ref|YP_003607605.1| Proline racemase [Burkholderia sp. CCGE1002]... 402 e-110 >ref|YP_003773609.1| proline racemase [Herbaspirillum seropedicae SmR1] gb|ADJ61701.1| proline racemase protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 659 bits (1699), Expect = 0.0, Method: Composition-based stats. Identities = 323/336 (96%), Positives = 328/336 (97%) Query: 1 MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRRFLMNEPRGH 60 MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLR FLMNEPRGH Sbjct: 1 MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRCFLMNEPRGH 60 Query: 61 ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTQPQTRICF 120 ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERT PQTRICF Sbjct: 61 ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPQTRICF 120 Query: 121 DAPAGFIEAFVVWDGVRAGKVSFNNVPAFIYRRDVEVETPGFGKITGDIVFGGAFYYYIN 180 DAPAGFIEAFV WDG RAGKVSFNNVPAFIYRRDVEV+TPGFGKITGDIVFGGAFYYYIN Sbjct: 121 DAPAGFIEAFVEWDGERAGKVSFNNVPAFIYRRDVEVDTPGFGKITGDIVFGGAFYYYIN 180 Query: 181 AAQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSEPNFPGADQ 240 A QAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDS PNFPGADQ Sbjct: 181 ATQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSAPNFPGADQ 240 Query: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQNYVNGSIVGSNFGVRVTAATKVG 300 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQ YVNGSIVGSNFGVRVTAAT+VG Sbjct: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQPYVNGSIVGSNFGVRVTAATQVG 300 Query: 301 DFDGALTEVSGHAHIMSTNQWVLEESDPFPTGFFLR 336 F+GALTEVSG+AHIMSTNQWVLE+SDPFPTGFFLR Sbjct: 301 PFEGALTEVSGYAHIMSTNQWVLEQSDPFPTGFFLR 336 >ref|YP_004754191.1| proline racemase [Collimonas fungivorans Ter331] gb|AEK63368.1| proline racemase [Collimonas fungivorans Ter331] Length = 366 Score = 545 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 264/336 (78%), Positives = 288/336 (85%) Query: 1 MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRRFLMNEPRGH 60 MLSYTRT+ T+DAHTGGEPLRIV+SGLP +P TILE+R WL+ RDDLR+FLMNEPRGH Sbjct: 31 MLSYTRTIHTVDAHTGGEPLRIVISGLPPVPGKTILERRCWLKAQRDDLRQFLMNEPRGH 90 Query: 61 ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTQPQTRICF 120 ADMYGAYLLPPVT ADFGVIFIHNEGYSDMCGHGIIALGKVLVE+ +VER+ P TRI F Sbjct: 91 ADMYGAYLLPPVTPAADFGVIFIHNEGYSDMCGHGIIALGKVLVELNHVERSMPLTRIGF 150 Query: 121 DAPAGFIEAFVVWDGVRAGKVSFNNVPAFIYRRDVEVETPGFGKITGDIVFGGAFYYYIN 180 D PAGFIEA V WDG RAG V+F NVPAFIY+RDVEVETP FGK+TGDIVFGGAFYYY+N Sbjct: 151 DTPAGFIEAQVEWDGQRAGAVTFRNVPAFIYQRDVEVETPSFGKVTGDIVFGGAFYYYMN 210 Query: 181 AAQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSEPNFPGADQ 240 A QAG+ +KPE V LIQLGAETK AV +V I HPLEPGL+TLYGTIID PN GADQ Sbjct: 211 ADQAGVKIKPEQVGSLIQLGAETKQAVKDQVKIQHPLEPGLDTLYGTIIDGAPNDAGADQ 270 Query: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQNYVNGSIVGSNFGVRVTAATKVG 300 +NVCIFADREVDRSPTGTGTSGRAAQLFLR +LALNQ VN SIVGS F VRVT TKVG Sbjct: 271 ANVCIFADREVDRSPTGTGTSGRAAQLFLRQKLALNQVLVNESIVGSCFRVRVTGTTKVG 330 Query: 301 DFDGALTEVSGHAHIMSTNQWVLEESDPFPTGFFLR 336 +FD TEV+G+AHIM NQWVLE+SDPFP GFFLR Sbjct: 331 EFDAVHTEVTGNAHIMGFNQWVLEDSDPFPQGFFLR 366 >ref|YP_001859545.1| proline racemase [Burkholderia phymatum STM815] gb|ACC72499.1| proline racemase [Burkholderia phymatum STM815] Length = 335 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 195/335 (58%), Positives = 244/335 (72%) Query: 2 LSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRRFLMNEPRGHA 61 + R + T++ HTGGEP RIV SGLP+IP TI+E+RAWL++H D LRR LM EPRGHA Sbjct: 1 MKLNRVISTVEVHTGGEPFRIVTSGLPRIPGKTIVERRAWLKQHADYLRRALMLEPRGHA 60 Query: 62 DMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTQPQTRICFD 121 DMYG YL PV+ GADFG+IF+HNEGYSD CGHG+IAL V +G+VERT+P+TR+ D Sbjct: 61 DMYGGYLTDPVSEGADFGIIFVHNEGYSDHCGHGVIALATTAVALGWVERTEPETRVGID 120 Query: 122 APAGFIEAFVVWDGVRAGKVSFNNVPAFIYRRDVEVETPGFGKITGDIVFGGAFYYYINA 181 AP GFIEAFV WDG AG V F NVP+FI++RDV VETPGFG + GDI FGGAFY+Y + Sbjct: 121 APCGFIEAFVKWDGNHAGSVRFVNVPSFIWQRDVSVETPGFGTVLGDIAFGGAFYFYTSG 180 Query: 182 AQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSEPNFPGADQS 241 A GL V+ V +LIQ GAE K A A + HPL P ++ +YGTIID+ P PG+ Q+ Sbjct: 181 APFGLDVREPQVDRLIQFGAEVKRAANAAFEVRHPLIPEIDHIYGTIIDNAPRHPGSTQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQNYVNGSIVGSNFGVRVTAATKVGD 301 N C+FADREVDRSPTG+GT+GR AQL+LRGQL ++ VN SI+G+ F RV + TK+ Sbjct: 241 NCCVFADREVDRSPTGSGTAGRVAQLYLRGQLGKDETLVNESIIGTVFRGRVLSETKLDR 300 Query: 302 FDGALTEVSGHAHIMSTNQWVLEESDPFPTGFFLR 336 FD + E+ G AHI W+++E DP GF +R Sbjct: 301 FDAVIPEIEGDAHICGFANWIVDERDPLTYGFLVR 335 >ref|YP_003704518.1| proline racemase [Truepera radiovictrix DSM 17093] gb|ADI13975.1| proline racemase [Truepera radiovictrix DSM 17093] Length = 335 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 200/335 (59%), Positives = 241/335 (71%) Query: 2 LSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRRFLMNEPRGHA 61 + + RT TIDAHT GEPLRIV +G+P IP T+LE+R W+R++ D +RR LM EPRGHA Sbjct: 1 MEFRRTYTTIDAHTAGEPLRIVTAGIPLIPGATMLEKRRWVRDNLDGVRRSLMWEPRGHA 60 Query: 62 DMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTQPQTRICFD 121 DMYG Y+ PPVT ADFGVIF+HNEGYS MCGHGIIA+ V V G V P+TR+ D Sbjct: 61 DMYGCYVTPPVTPEADFGVIFMHNEGYSTMCGHGIIAVATVAVATGMVSAQTPETRVGID 120 Query: 122 APAGFIEAFVVWDGVRAGKVSFNNVPAFIYRRDVEVETPGFGKITGDIVFGGAFYYYINA 181 +PAGFIEAFV WDG +A V F NVP+F+Y RD+ V TP FG++T DI FGGAFY Y++ Sbjct: 121 SPAGFIEAFVAWDGRKASGVRFRNVPSFLYARDLTVVTPSFGELTLDIAFGGAFYAYLDG 180 Query: 182 AQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSEPNFPGADQS 241 AQAGL V+PE R L+QLG E K AV A + + HP EP L LYGTII P G+DQ+ Sbjct: 181 AQAGLAVRPENTRALVQLGDEVKRAVEATLEVVHPEEPALRGLYGTIIGGPPRHEGSDQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQNYVNGSIVGSNFGVRVTAATKVGD 301 N+C+FADREVDRSPTGTGT+GR AQL+ RG+LAL Q +VN SI+G+ F RV + T VGD Sbjct: 241 NICVFADREVDRSPTGTGTAGRMAQLYARGRLALGQTFVNESILGTVFTGRVLSETTVGD 300 Query: 302 FDGALTEVSGHAHIMSTNQWVLEESDPFPTGFFLR 336 + EVSG AHI QWV+E D GF LR Sbjct: 301 LPAVVPEVSGSAHITGFCQWVVEPDDAVGEGFLLR 335 >ref|YP_003607605.1| Proline racemase [Burkholderia sp. CCGE1002] gb|ADG18094.1| Proline racemase [Burkholderia sp. CCGE1002] Length = 335 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 187/335 (55%), Positives = 240/335 (71%) Query: 2 LSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRRFLMNEPRGHA 61 + TRT+ T++ HTGGE RIV SGLP++P TI+++RAWL+E+ DD+R LM EPRGHA Sbjct: 1 MKITRTISTVEVHTGGEAFRIVTSGLPRLPGDTIVKRRAWLKENADDIRTALMFEPRGHA 60 Query: 62 DMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTQPQTRICFD 121 DMYG YL PV+ ADFG+IF+HNEGYSD CGHG+IAL VE+G+V+R PQTR+ D Sbjct: 61 DMYGGYLTEPVSPTADFGIIFVHNEGYSDHCGHGVIALSTAAVELGWVQRQIPQTRVGID 120 Query: 122 APAGFIEAFVVWDGVRAGKVSFNNVPAFIYRRDVEVETPGFGKITGDIVFGGAFYYYINA 181 AP GFIEAFV WDG AG V F NVP+FI++RDV V+TP FG + GDI FGGAFY+Y + Sbjct: 121 APCGFIEAFVQWDGEHAGNVRFVNVPSFIWKRDVTVQTPSFGTVKGDIAFGGAFYFYTDG 180 Query: 182 AQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSEPNFPGADQS 241 A GL V+ V +LI+ GAE K A + HP P +N +YGTII + P G+ Q+ Sbjct: 181 APHGLAVRESSVEELIKFGAEVKKAANDAYPVEHPDIPEINHIYGTIIANAPRHEGSTQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQNYVNGSIVGSNFGVRVTAATKVGD 301 N C+FADREVDRSPTG+GT GR AQL+LRG+LA+N+ VN SI+G+ F RV + T VGD Sbjct: 241 NCCVFADREVDRSPTGSGTGGRVAQLYLRGELAMNETLVNESIIGTVFKGRVLSETTVGD 300 Query: 302 FDGALTEVSGHAHIMSTNQWVLEESDPFPTGFFLR 336 F + EV G+A++ W+++E DP GF +R Sbjct: 301 FKAVIPEVEGNAYVCGFATWIVDERDPLTYGFLVR 335