BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0413.p (405 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773608.1| branched-chain amino acid ABC transporter pe... 676 0.0 ref|YP_004754192.1| extracellular ligand-binding receptor [Colli... 546 e-153 ref|YP_004847757.1| extracellular ligand-binding receptor [Pseud... 425 e-117 ref|ZP_03697456.1| Extracellular ligand-binding receptor [Lutiel... 422 e-116 ref|YP_524053.1| extracellular ligand-binding receptor [Rhodofer... 405 e-111 >ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19683.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ61700.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 676 bits (1745), Expect = 0.0, Method: Composition-based stats. Identities = 359/378 (94%), Positives = 372/378 (98%) Query: 28 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERL 87 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMA+ERL Sbjct: 1 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERL 60 Query: 88 NAQPITVGGKKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN 147 NAQPITVGGKKIKF+V+AEDDQADPK GVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN Sbjct: 61 NAQPITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN 120 Query: 148 DAGIVTATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYG 207 DAGIV ATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELK KRVAVIDDRTAYG Sbjct: 121 DAGIVVATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYG 180 Query: 208 QGLAEEFAKVAKANGIEVISKDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR 267 QGLA+EF KVAKANGI+V+S DFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR Sbjct: 181 QGLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR 240 Query: 268 QMKQLGIDVPLMGGDGICSPEMGRLGGDAIGETVYCTQGGTMLDKAKDGKVFADDYQKKY 327 QMKQLG+DVPLMGGDGICSPEMGRLGGDAIGE+VYCTQGGTMLDKAK+GKVF+D+YQKKY Sbjct: 241 QMKQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKY 300 Query: 328 SRPAETYAVSFYDGMMLIAQAMKQANSVDPKAFGPAMAKISYKGVAGQYDFDANHDLKQS 387 +RPAETYAVSFYDGMMLIAQAMKQANSVDPK FGPA+AKISYKGVAGQYDFDANHDLKQS Sbjct: 301 NRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQS 360 Query: 388 PVTVYRFKDGLPVPLTSY 405 PVTVYRFKDGLPVPLTSY Sbjct: 361 PVTVYRFKDGLPVPLTSY 378 >ref|YP_004754192.1| extracellular ligand-binding receptor [Collimonas fungivorans Ter331] gb|AEK63369.1| Extracellular ligand-binding receptor [Collimonas fungivorans Ter331] Length = 375 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 283/369 (76%), Positives = 318/369 (86%) Query: 37 IIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGG 96 ++ LA PA MAQETQVVKIGFS PLTGPQASAG+DNQGGL MA+++LN+Q + +GG Sbjct: 7 LMMVMLAAFPALVMAQETQVVKIGFSGPLTGPQASAGRDNQGGLAMAIDKLNSQGMVIGG 66 Query: 97 KKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIVTATV 156 KKIKFE EDDQADP+ GV VAQKL D GVKA+VGPYNSGVTIPASRVYNDAGIV TV Sbjct: 67 KKIKFEAQMEDDQADPRAGVGVAQKLVDMGVKAVVGPYNSGVTIPASRVYNDAGIVMGTV 126 Query: 157 ASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFAK 216 ASNPK+T QGF ++FRVAASDSQLGGKMALYAAKELK+K VA+IDDRTAYGQGLAEEF+K Sbjct: 127 ASNPKVTLQGFHSVFRVAASDSQLGGKMALYAAKELKVKTVAIIDDRTAYGQGLAEEFSK 186 Query: 217 VAKANGIEVISKDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGIDV 276 VAKANGI+V+ DFTNDKATDFTAILTSIK KKPDA+F GGY+PQGGP+ RQMKQLG+ Sbjct: 187 VAKANGIKVLGNDFTNDKATDFTAILTSIKSKKPDAIFYGGYSPQGGPMMRQMKQLGVSA 246 Query: 277 PLMGGDGICSPEMGRLGGDAIGETVYCTQGGTMLDKAKDGKVFADDYQKKYSRPAETYAV 336 +GGDGIC+PEMGRLGGDAI + VYCTQGG MLDK GK FA DYQK+Y+RPAETYA Sbjct: 247 KFLGGDGICAPEMGRLGGDAITDQVYCTQGGAMLDKLASGKTFAADYQKRYNRPAETYAA 306 Query: 337 SFYDGMMLIAQAMKQANSVDPKAFGPAMAKISYKGVAGQYDFDANHDLKQSPVTVYRFKD 396 SFYDGMM+IAQAMK ANSV+PK + A+ KI YKGVAG Y+FDANHDLKQSPVTV+RFK Sbjct: 307 SFYDGMMVIAQAMKDANSVEPKQYVSALEKIHYKGVAGSYEFDANHDLKQSPVTVFRFKG 366 Query: 397 GLPVPLTSY 405 G+P LTSY Sbjct: 367 GVPEALTSY 375 >ref|YP_004847757.1| extracellular ligand-binding receptor [Pseudogulbenkiania sp. NH8B] dbj|BAK77343.1| extracellular ligand-binding receptor [Pseudogulbenkiania sp. NH8B] Length = 382 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 211/366 (57%), Positives = 278/366 (75%) Query: 37 IIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGG 96 + AA LAL P A E VKIG + PLTGPQA+ GKD++ GL MA++RLNAQ I VGG Sbjct: 13 VFAAGLALTPLLGFAAEEMTVKIGLTGPLTGPQAAIGKDHENGLRMAMDRLNAQGIVVGG 72 Query: 97 KKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIVTATV 156 KK++FE+++EDD ADP+ G+ VAQ+ D VKA++GPYNSGV IP S++ NDAGIV ATV Sbjct: 73 KKVRFEMMSEDDGADPRTGMTVAQRFVDANVKAVIGPYNSGVAIPISKLLNDAGIVMATV 132 Query: 157 ASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFAK 216 ASNPK+TQ G+ +FR+ ASD+QLG KM ++AAK LK K A+IDDRTAYGQG+A+EF K Sbjct: 133 ASNPKVTQNGYPYVFRIGASDTQLGTKMGVFAAKNLKAKSFAIIDDRTAYGQGVADEFIK 192 Query: 217 VAKANGIEVISKDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGIDV 276 AKANGI++++++FT DK+TDF+AILTSIK KPD +F GGY QGGP++RQM +LG+ Sbjct: 193 AAKANGIQIVAREFTTDKSTDFSAILTSIKAAKPDGIFYGGYYSQGGPMRRQMARLGLKA 252 Query: 277 PLMGGDGICSPEMGRLGGDAIGETVYCTQGGTMLDKAKDGKVFADDYQKKYSRPAETYAV 336 L+GGDGIC+ E+ +LGG + VYC QGG +L++ +GK F +Y+K++S Y Sbjct: 253 YLLGGDGICNEELAKLGGATVDGGVYCPQGGPVLEQTSEGKQFTTEYKKRFSIEPLVYGA 312 Query: 337 SFYDGMMLIAQAMKQANSVDPKAFGPAMAKISYKGVAGQYDFDANHDLKQSPVTVYRFKD 396 S YDG+ +IA+AM++ANSV+PK + A+A IS +GVAG Y FD DLK SP+TVY FK+ Sbjct: 313 SMYDGLNIIAKAMQKANSVEPKQYRAALAAISQQGVAGTYQFDDKRDLKNSPITVYSFKN 372 Query: 397 GLPVPL 402 G PVP+ Sbjct: 373 GQPVPV 378 >ref|ZP_03697456.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] gb|EEG09942.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] Length = 381 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 209/366 (57%), Positives = 277/366 (75%) Query: 37 IIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQPITVGG 96 + AA LAL P A E VKIG + PLTGPQA+ GKD++ GL MA++RLNAQ I VGG Sbjct: 12 VFAAGLALTPLLGFAAEEMTVKIGLTGPLTGPQAAIGKDHENGLRMAMDRLNAQGIVVGG 71 Query: 97 KKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAGIVTATV 156 KK++FE+++EDD ADP+ G+ VAQ+ D VKA++GPYNSGV IP S++ NDAGIV ATV Sbjct: 72 KKVRFEMMSEDDGADPRTGMTVAQRFVDANVKAVIGPYNSGVAIPISKLLNDAGIVMATV 131 Query: 157 ASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGLAEEFAK 216 ASNPK+TQ G+ +FR+ ASD+QLG KM ++AAK LK K A+IDDRTAYGQG+A+EF K Sbjct: 132 ASNPKVTQNGYPYVFRIGASDTQLGTKMGVFAAKNLKAKSFAIIDDRTAYGQGVADEFIK 191 Query: 217 VAKANGIEVISKDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMKQLGIDV 276 AKANGI++++++FT DK+TDF+AILTSIK KPD +F GGY QGGP++RQM +LG+ Sbjct: 192 AAKANGIQIVAREFTTDKSTDFSAILTSIKAAKPDGIFYGGYYSQGGPMRRQMARLGLKA 251 Query: 277 PLMGGDGICSPEMGRLGGDAIGETVYCTQGGTMLDKAKDGKVFADDYQKKYSRPAETYAV 336 L+GGDGIC+ E+ +LGG + VYC QGG +L++ +GK F +Y+K++S Y Sbjct: 252 YLLGGDGICNEELAKLGGTTVDGGVYCPQGGPVLEQTSEGKQFTTEYKKRFSIEPLVYGA 311 Query: 337 SFYDGMMLIAQAMKQANSVDPKAFGPAMAKISYKGVAGQYDFDANHDLKQSPVTVYRFKD 396 S YDG+ +IA+AM++ANSV+PK + A+A + +GVAG Y FD DLK SP+TVY FK+ Sbjct: 312 SMYDGLNIIAKAMQKANSVEPKQYRAALAASNQQGVAGTYQFDDKRDLKNSPITVYSFKN 371 Query: 397 GLPVPL 402 G PVP+ Sbjct: 372 GQPVPV 377 >ref|YP_524053.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD70522.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 377 Score = 405 bits (1042), Expect = e-111, Method: Composition-based stats. Identities = 203/375 (54%), Positives = 276/375 (73%), Gaps = 1/375 (0%) Query: 31 RVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAVERLNAQ 90 + + L + A + A AQE +VV IG + PL+G A AGKDN+ G+ +A+E LN++ Sbjct: 4 KTTFLPLFGALAVAFASHAYAQEQKVV-IGLTGPLSGANAFAGKDNENGVRLAIEDLNSK 62 Query: 91 PITVGGKKIKFEVLAEDDQADPKQGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYNDAG 150 ITVGGK +KFE+ +EDDQ DP+ GV VAQKL D GVK ++GPY SGV +PASR+Y+ G Sbjct: 63 KITVGGKMLKFELQSEDDQCDPRAGVMVAQKLVDSGVKFVMGPYCSGVAVPASRLYSQGG 122 Query: 151 IVTATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKLKRVAVIDDRTAYGQGL 210 + +TV +NPK+TQ G+ LFR+ ASD+Q+G MA YAAK LK+K VAVIDDRTA+GQG+ Sbjct: 123 AMLSTVGTNPKVTQGGYKNLFRIIASDNQIGASMAAYAAKVLKVKSVAVIDDRTAFGQGV 182 Query: 211 AEEFAKVAKANGIEVISKDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKRQMK 270 AEEF K AK G+ V+ ++FT DKATDFTAILT++K KKP+A+F GGYAPQ GP+ RQ++ Sbjct: 183 AEEFTKEAKNLGLSVVGQEFTTDKATDFTAILTTLKAKKPEAIFFGGYAPQAGPLARQLQ 242 Query: 271 QLGIDVPLMGGDGICSPEMGRLGGDAIGETVYCTQGGTMLDKAKDGKVFADDYQKKYSRP 330 QL I L+GGD +CSPEMG+LGG+A+ + V+C QGG++LDKA +G F ++K++ Sbjct: 243 QLAIKTKLLGGDTLCSPEMGKLGGEAVNDVVFCAQGGSILDKAANGPTFKAKFKKRFGLD 302 Query: 331 AETYAVSFYDGMMLIAQAMKQANSVDPKAFGPAMAKISYKGVAGQYDFDANHDLKQSPVT 390 + YA FYD M I ++M++ANS+DP G + K +YKG+AG Y +D ++KQ+P+T Sbjct: 303 PDVYAAPFYDQTMFIGESMQKANSIDPNKVGAEIYKSTYKGIAGNYAYDDKGNMKQAPIT 362 Query: 391 VYRFKDGLPVPLTSY 405 VY FK+ LPVPL SY Sbjct: 363 VYTFKNALPVPLASY 377