BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0411.p         (106 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773606.1| AraC family transcription regulator protein ...   150   4e-35
ref|ZP_02884336.1| transcriptional regulator, AraC family [Burkh...    98   3e-19
ref|YP_003911160.1| AraC family transcriptional regulator [Burkh...    98   4e-19
ref|YP_001861479.1| AraC family transcriptional regulator [Burkh...    93   1e-17
gb|EGP43758.1| AraC family transcriptional regulator [Achromobac...    93   2e-17

>ref|YP_003773606.1| AraC family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61698.1| AraC family transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 323

 Score =  150 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 78/97 (80%), Positives = 88/97 (90%)

Query: 1   MLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMST 60
           ML+AP EDWSLPRLAALCHMSRATF+RRF EVG +TP +V+ QLRM+QAAR LSYSK +T
Sbjct: 222 MLKAPAEDWSLPRLAALCHMSRATFIRRFAEVGASTPAQVLMQLRMAQAARLLSYSKQAT 281

Query: 61  AQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRKMRGA 97
           AQIGEAVGYQSEAAFNRVF+K+SGMGPGAYRR+ R A
Sbjct: 282 AQIGEAVGYQSEAAFNRVFRKYSGMGPGAYRRQARAA 318


>ref|ZP_02884336.1| transcriptional regulator, AraC family [Burkholderia graminis
           C4D1M]
 gb|EDT10340.1| transcriptional regulator, AraC family [Burkholderia graminis
           C4D1M]
          Length = 346

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/93 (53%), Positives = 64/93 (68%)

Query: 1   MLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMST 60
           M + P + W+LP LA LCHMSRATF R F E  G +  +V+  +RM+ A R L+ + MS 
Sbjct: 243 MFDEPGKPWTLPTLAELCHMSRATFARHFDEAIGRSASDVLTDIRMAIAGRKLAQTGMSV 302

Query: 61  AQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRK 93
           A+IGEAVGYQSEAAF RVFK+  GM P  +R +
Sbjct: 303 AEIGEAVGYQSEAAFQRVFKRQVGMTPAKWRAR 335


>ref|YP_003911160.1| AraC family transcriptional regulator [Burkholderia sp. CCGE1003]
 gb|ADN61869.1| transcriptional regulator, AraC family [Burkholderia sp. CCGE1003]
          Length = 345

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 65/93 (69%)

Query: 1   MLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMST 60
           M + P + W+LP+LA LCHMSRATF R F+E    +  +V+ ++RM+ A R L  + MS 
Sbjct: 241 MFDEPAKPWTLPQLAELCHMSRATFARHFEEAISRSASDVLTEIRMALAGRKLVQTTMSV 300

Query: 61  AQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRK 93
           A+IGEAVGYQSEAAF RVFK+  GM P  +R +
Sbjct: 301 AEIGEAVGYQSEAAFQRVFKRQVGMTPAKWRAR 333


>ref|YP_001861479.1| AraC family transcriptional regulator [Burkholderia phymatum
           STM815]
 gb|ACC74433.1| transcriptional regulator, AraC family [Burkholderia phymatum
           STM815]
          Length = 340

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/101 (50%), Positives = 65/101 (64%)

Query: 1   MLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMST 60
           M E+P + W+L + AALC+MSRATFVR+FQE  G +  +V+ ++RM+ A R L  S    
Sbjct: 227 MFESPGKPWTLDQFAALCNMSRATFVRQFQEAIGRSATDVLTEVRMTIAGRMLLESTTPV 286

Query: 61  AQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRKMRGAQALQ 101
             IGE VGYQSEAAF RVFKK  G+ P  +R      QA Q
Sbjct: 287 GDIGETVGYQSEAAFQRVFKKQIGVTPARWRASGGHVQAAQ 327


>gb|EGP43758.1| AraC family transcriptional regulator [Achromobacter xylosoxidans
           AXX-A]
          Length = 313

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/93 (52%), Positives = 60/93 (64%)

Query: 1   MLEAPHEDWSLPRLAALCHMSRATFVRRFQEVGGATPGEVVQQLRMSQAARFLSYSKMST 60
           ML AP E W+L  LA  CH+SRATF R+F    G TP  ++  +RM  AAR L   K S 
Sbjct: 210 MLLAPTEPWTLASLAERCHLSRATFARQFVRASGLTPLRLLTAIRMEHAARQLERRKWSV 269

Query: 61  AQIGEAVGYQSEAAFNRVFKKFSGMGPGAYRRK 93
           A++    GYQSEAAF R FK+  G+GPGAYRR+
Sbjct: 270 ARVAAECGYQSEAAFARAFKQHFGVGPGAYRRQ 302