BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0406.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773603.1| hypothetical protein Hsero_0169 [Herbaspiril...   169   9e-41
ref|YP_004754687.1| hypothetical protein CFU_4042 [Collimonas fu...    72   3e-11
ref|YP_001354900.1| hypothetical protein mma_3210 [Janthinobacte...    60   1e-07

>ref|YP_003773603.1| hypothetical protein Hsero_0169 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61695.1| hypothetical protein Hsero_0169 [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score =  169 bits (429), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 101/146 (69%), Positives = 109/146 (74%), Gaps = 7/146 (4%)

Query: 1   MNRLRSLRRPAVIVFLAMSLLFAQMLGFVHGIAHAGWVPGTVHSLISEALFDETEDDHAA 60
           ++RLR L  PA++  LAMSLL AQMLGFVHGIAHAGW PGTVHSLIS+ALFDE E D  A
Sbjct: 4   LHRLRCLHTPALVAILAMSLLLAQMLGFVHGIAHAGWAPGTVHSLISDALFDEGEGDDHA 63

Query: 61  ASVATSAALGSDSGRDADAHDLHDVHAHHPHHSCLDYDAAALSVGVHFDFPPLPLLPPVR 120
           AS           G      D   VHA H HHSC+ YDAAALS G HFDFPPLPL+PPVR
Sbjct: 64  ASAHVH-------GGQQQGEDHAHVHADHSHHSCVSYDAAALSAGAHFDFPPLPLMPPVR 116

Query: 121 LLALWQAFASWDAPLNCHFSSRAPPR 146
           +LALWQAFASWD PLNCHFSSRAPPR
Sbjct: 117 VLALWQAFASWDPPLNCHFSSRAPPR 142


>ref|YP_004754687.1| hypothetical protein CFU_4042 [Collimonas fungivorans Ter331]
 gb|AEK63864.1| hypothetical protein CFU_4042 [Collimonas fungivorans Ter331]
          Length = 130

 Score = 72.0 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 60/131 (45%), Gaps = 28/131 (21%)

Query: 16  LAMSLLFAQMLGFVHGIAHAGWVPGTVHSLISEALFDETEDDHAAASVATSAALGSDSGR 75
           L  ++LF+Q LG  H I HA W      SL            H  + +      G  +  
Sbjct: 27  LICAILFSQWLGLTHSIVHAAWENKQATSLT-----------HITSVIERVIEGGGKA-- 73

Query: 76  DADAHDLHDVHAHHPHHSCLDYDAAALSVGVHFDFPPLPLLPPVRLLALWQAFASWDAPL 135
                          HHSC  +D A L+  ++     LP LP   LLALWQAFASWDAP 
Sbjct: 74  ---------------HHSCAAFDDATLAATIYSAPLNLPPLPGKHLLALWQAFASWDAPF 118

Query: 136 NCHFSSRAPPR 146
            CHFSSRAPPR
Sbjct: 119 TCHFSSRAPPR 129


>ref|YP_001354900.1| hypothetical protein mma_3210 [Janthinobacterium sp. Marseille]
 gb|ABR91345.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 123

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/144 (36%), Positives = 63/144 (43%), Gaps = 37/144 (25%)

Query: 6   SLRRPAVIVFLAMSLLFAQMLGFVHGIAHAGWVPGTVHSLISEALFDETEDDHAAASVAT 65
           + RR      L   +LFAQ +G  H I H  W     H +          ++H  A VA 
Sbjct: 11  TTRRLCFAALLVALVLFAQWMGLRHRIEHVDWGSVQHHQM----------EEHGTA-VAE 59

Query: 66  SAALGSDSGRDADAHDLHDVHAHHPHHSCLDYDAAALSVGVHFDFPPLPLLP----PVRL 121
               G  S                  HSC+ +D  AL+ G     P LP  P     VR+
Sbjct: 60  LEYAGDKS------------------HSCILFDGMALADGA----PLLPFSPVLQTSVRV 97

Query: 122 LALWQAFASWDAPLNCHFSSRAPP 145
           LALW A+ SWDAPL CHFSSRAPP
Sbjct: 98  LALWAAYISWDAPLLCHFSSRAPP 121