BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0405.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773602.1| DnaK suppressor protein [Herbaspirillum sero...   256   7e-67
ref|YP_004754686.1| DksA/TraR family C4-type zinc finger protein...   237   4e-61
ref|YP_001101193.1| DnaK suppressor protein [Herminiimonas arsen...   237   5e-61
ref|YP_001354896.1| dnaK suppressor protein [Janthinobacterium s...   236   9e-61
emb|CAM32669.1| DnaK suppressor protein [Herbaspirillum seropedi...   233   7e-60

>ref|YP_003773602.1| DnaK suppressor protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ61694.1| DnaK suppressor protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  256 bits (654), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 159/161 (98%), Positives = 161/161 (100%)

Query: 1   MDIVEKPVVLKVSEVATKTPKTTPAAQLLTEEQILKMDEKDYMNEAQLAFFKARLQQLEK 60
           MDIVEKPVVLKVSEVATKTPKTTPAAQLLTEE+ILKMDEKDYMNEAQLAFFKARLQQLEK
Sbjct: 1   MDIVEKPVVLKVSEVATKTPKTTPAAQLLTEEEILKMDEKDYMNEAQLAFFKARLQQLEK 60

Query: 61  DLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSIDNGE 120
           DLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIV+IDNGE
Sbjct: 61  DLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVAIDNGE 120

Query: 121 YGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161
           YGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 121 YGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161


>ref|YP_004754686.1| DksA/TraR family C4-type zinc finger protein [Collimonas
           fungivorans Ter331]
 gb|AEK63863.1| C4-type zinc finger protein, DksA/TraR family [Collimonas
           fungivorans Ter331]
          Length = 306

 Score =  237 bits (605), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 144/160 (90%), Positives = 146/160 (91%)

Query: 2   DIVEKPVVLKVSEVATKTPKTTPAAQLLTEEQILKMDEKDYMNEAQLAFFKARLQQLEKD 61
           D +EK VV K SEVATKT K T  + LLTEEQILKM EKDYMNEAQLAFFKARLQQLE D
Sbjct: 147 DKIEKNVVSKASEVATKTTKPTSDSILLTEEQILKMGEKDYMNEAQLAFFKARLQQLEID 206

Query: 62  LLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSIDNGEY 121
           LLKNA ETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSI SID GEY
Sbjct: 207 LLKNAGETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIASIDAGEY 266

Query: 122 GWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161
           GWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 267 GWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 306


>ref|YP_001101193.1| DnaK suppressor protein [Herminiimonas arsenicoxydans]
          Length = 320

 Score =  237 bits (604), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 145/164 (88%), Positives = 151/164 (92%), Gaps = 4/164 (2%)

Query: 2   DIVEKPVVLKVSEVATKTPKTTPAA----QLLTEEQILKMDEKDYMNEAQLAFFKARLQQ 57
           D +E+PVVLKV EVATK+ KTTP A     LL+EEQILKM EKDYMN AQLAFFK RLQQ
Sbjct: 157 DNIEQPVVLKVREVATKSSKTTPNAANDGTLLSEEQILKMSEKDYMNPAQLAFFKDRLQQ 216

Query: 58  LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSID 117
           LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSI SID
Sbjct: 217 LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIASID 276

Query: 118 NGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161
           +G+YGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 277 SGDYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 320


>ref|YP_001354896.1| dnaK suppressor protein [Janthinobacterium sp. Marseille]
 gb|ABR91493.1| dnaK suppressor protein [Janthinobacterium sp. Marseille]
          Length = 310

 Score =  236 bits (602), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 143/164 (87%), Positives = 152/164 (92%), Gaps = 3/164 (1%)

Query: 1   MDIVEKPVVLKVSEVATKTPKTTPAAQ---LLTEEQILKMDEKDYMNEAQLAFFKARLQQ 57
           +D +EKPVVLK SEVATK+ K+T  A    LLTE QILKM EKDYMN+AQLAFFK RLQQ
Sbjct: 147 VDKIEKPVVLKASEVATKSSKSTSVASDTTLLTEAQILKMGEKDYMNDAQLAFFKNRLQQ 206

Query: 58  LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSID 117
           LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQS++SID
Sbjct: 207 LEKDLLKNADETTEHLRETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSLLSID 266

Query: 118 NGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLYGD 161
           +GEYGWCEETGEPIG+PRLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 267 SGEYGWCEETGEPIGVPRLLARPTATLSLEAQQRRELKQKLYGD 310


>emb|CAM32669.1| DnaK suppressor protein [Herbaspirillum seropedicae]
          Length = 147

 Score =  233 bits (594), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 144/147 (97%), Positives = 147/147 (100%)

Query: 15  VATKTPKTTPAAQLLTEEQILKMDEKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLR 74
           +ATKTPKTTPAAQLLTEE+ILKMDEKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLR
Sbjct: 1   MATKTPKTTPAAQLLTEEEILKMDEKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLR 60

Query: 75  ETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVSIDNGEYGWCEETGEPIGIP 134
           ETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIV+IDNGEYGWCEETGEPIGIP
Sbjct: 61  ETVLVPDPADRATIEEEHALELRTRDRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIP 120

Query: 135 RLLARPTATLSLEAQQRRELKQKLYGD 161
           RLLARPTATLSLEAQQRRELKQKLYGD
Sbjct: 121 RLLARPTATLSLEAQQRRELKQKLYGD 147