BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0400.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776199.1| citrate lyase beta subunit [Herbaspirillum s... 380 e-103 ref|ZP_04762925.1| HpcH/HpaI aldolase [Acidovorax delafieldii 2A... 238 9e-61 ref|ZP_08873166.1| Citryl-CoA lyase [Verminephrobacter sp. At4] 219 4e-55 ref|YP_004386101.1| Citryl-CoA lyase [Alicycliphilus denitrifica... 214 1e-53 ref|YP_002943939.1| HpcH/HpaI aldolase [Variovorax paradoxus S11... 214 2e-53 >ref|YP_003776199.1| citrate lyase beta subunit [Herbaspirillum seropedicae SmR1] gb|ADJ64291.1| citrate lyase beta subunit protein [Herbaspirillum seropedicae SmR1] Length = 277 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 214/273 (78%), Positives = 235/273 (86%), Gaps = 3/273 (1%) Query: 8 ASSYLFVPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWL---RGNGPQP 64 ASSYLFVPANRPERYAKAL+SGADAVIVDLEDAVA P KE AR TLARWL G Q Sbjct: 3 ASSYLFVPANRPERYAKALDSGADAVIVDLEDAVARPYKEAARETLARWLAGPEGQASQA 62 Query: 65 RLWVRINAADTVWHGDDLLTFSALSMAGIVLPKAEEAKTLSSIARRLGPGRGLIALIESA 124 RLWVRINAADTVWH DLLTFSAL +AGIVLPKAE+A + ++A L G GLIALIESA Sbjct: 63 RLWVRINAADTVWHEQDLLTFSALPVAGIVLPKAEDAAGVGAVAGALRSGSGLIALIESA 122 Query: 125 AGLAAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMASRLAGIAPPI 184 AGLAAMR+IAA PGVQRLAFGSIDAQ+DLGMQCGPEEEEL+ R+EMV+ASRLAGIA P+ Sbjct: 123 AGLAAMRQIAAAPGVQRLAFGSIDAQLDLGMQCGPEEEELLSLRVEMVLASRLAGIAAPV 182 Query: 185 DGVTTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELAWAEEVMAAV 244 DGVT F+D+A L R V+RARR+GFGAKLCIHP+QVE VRRGF+P EQELAWA EVMAAV Sbjct: 183 DGVTAGFDDEALLVRGVERARRLGFGAKLCIHPRQVEVVRRGFLPSEQELAWAAEVMAAV 242 Query: 245 RASDGGAISLKGKMIDKPVILQAEKFLHQAGRL 277 RASDGGAISLKG+MID+P+ILQAEKFL Q G L Sbjct: 243 RASDGGAISLKGRMIDRPLILQAEKFLRQVGAL 275 >ref|ZP_04762925.1| HpcH/HpaI aldolase [Acidovorax delafieldii 2AN] gb|EER60286.1| HpcH/HpaI aldolase [Acidovorax delafieldii 2AN] Length = 284 Score = 238 bits (606), Expect = 9e-61, Method: Composition-based stats. Identities = 143/275 (52%), Positives = 180/275 (65%), Gaps = 5/275 (1%) Query: 5 ITTASSYLFVPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWLRGNGPQ- 63 + A S LFVPA RPER+ KAL+SGAD VI+DLEDAV + QKE AR LA L G Q Sbjct: 6 VARARSLLFVPAGRPERFGKALDSGADCVILDLEDAVPMDQKEAARDQLAGRLPGFSQQQ 65 Query: 64 -PRLWVRINAADTVWHGDDL---LTFSALSMAGIVLPKAEEAKTLSSIARRLGPGRGLIA 119 R VRINAADT WH DDL +++ +AG+++PKA+ A+ L++IA LGP L+ Sbjct: 66 LARTLVRINAADTSWHADDLRLLAEWTSRGLAGVMVPKADAAQVLNAIAASLGPSATLVP 125 Query: 120 LIESAAGLAAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMASRLAG 179 L+ES AGL A +A+ V RLAFG +D Q+DLGM+CG E ELM R +V ASR A Sbjct: 126 LVESLAGLDAADRLASASQVARLAFGHLDFQLDLGMRCGVNELELMPVRFALVAASRRAL 185 Query: 180 IAPPIDGVTTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELAWAEE 239 + PIDGVTTD + L QRAR +G+GAKLCIHP QV V F P E+ WA Sbjct: 186 LQAPIDGVTTDTGNSERLQADTQRARGLGYGAKLCIHPAQVAAVNEAFSPSPNEVEWARR 245 Query: 240 VMAAVRASDGGAISLKGKMIDKPVILQAEKFLHQA 274 V+AA +A++G A SL G+M+D PVI A++ L QA Sbjct: 246 VLAAAQANEGRAFSLDGRMVDLPVIRLAQQTLEQA 280 >ref|ZP_08873166.1| Citryl-CoA lyase [Verminephrobacter sp. At4] Length = 299 Score = 219 bits (557), Expect = 4e-55, Method: Composition-based stats. Identities = 135/274 (49%), Positives = 170/274 (62%), Gaps = 6/274 (2%) Query: 5 ITTASSYLFVPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWLRGNGP-- 62 + A S+LFVPA+RPER AKAL SGAD V+VDLEDAV P K+ AR L P Sbjct: 9 VALARSFLFVPASRPERLAKALASGADIVVVDLEDAVEPPAKDSARQALCTRFGALEPAQ 68 Query: 63 QPRLWVRINAADTVWHGDDLLTFSALS---MAGIVLPKAEEAKTLSSIARRLGPGRGLIA 119 + RL VRINA T WH D+ + L+ +AG +LPKAE+ L+S+A PG L+ Sbjct: 69 RGRLMVRINARGTAWHAQDVALLAQLTDSGLAGAMLPKAEDGLALASLAGAC-PGLALLP 127 Query: 120 LIESAAGLAAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMASRLAG 179 L+ESA+G A+ +A P V RL G ID Q DLGM CG +E EL R MV+ASR AG Sbjct: 128 LMESASGFHALDAVAQAPQVARLGLGHIDLQADLGMACGDDEAELAPARWSMVVASRHAG 187 Query: 180 IAPPIDGVTTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELAWAEE 239 +A P+DGVT ND L R+RR GF AKLCIHP Q+ GV P E E+AWA Sbjct: 188 LAAPVDGVTIRLNDPQQLRADTARSRRFGFSAKLCIHPAQIAGVHAALAPTEAEVAWAHR 247 Query: 240 VMAAVRASDGGAISLKGKMIDKPVILQAEKFLHQ 273 V+ A R + GGA+ L G M+D PV+L+A++ L + Sbjct: 248 VVDASRLAQGGAVQLDGAMVDAPVLLRAQQILSR 281 >ref|YP_004386101.1| Citryl-CoA lyase [Alicycliphilus denitrificans K601] gb|AEB82585.1| Citryl-CoA lyase [Alicycliphilus denitrificans K601] Length = 287 Score = 214 bits (544), Expect = 1e-53, Method: Composition-based stats. Identities = 135/278 (48%), Positives = 172/278 (61%), Gaps = 5/278 (1%) Query: 1 MAPHITTASSYLFVPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWLRG- 59 M + A S+LFVPA +P+R KAL SGAD VI D EDAV KE AR+ LA + Sbjct: 1 MTDLVRNACSFLFVPATQPDRLPKALASGADMVIADWEDAVTPADKERARSALAGAVAAL 60 Query: 60 -NGPQPRLWVRINAADTVWHGDDLLTFSAL---SMAGIVLPKAEEAKTLSSIARRLGPGR 115 + RL VRINA T W DL L +AG V+PKAE A+TL ++AR GP Sbjct: 61 DGARRARLLVRINAEGTPWFATDLQALQQLMAQGLAGAVVPKAESAQTLQAVARAAGPQA 120 Query: 116 GLIALIESAAGLAAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMAS 175 L+ L+ES AGL A+ +AA P V RLAFG +D QVD GM CGP+E EL+ RM +V+A+ Sbjct: 121 ALLPLVESVAGLYAVDVLAAAPQVARLAFGHLDFQVDAGMACGPDEAELLPMRMAVVLAA 180 Query: 176 RLAGIAPPIDGVTTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELA 235 R AG+A P+DGVT D + +A +RARRMGFG KLCIHP QV + F PGE +A Sbjct: 181 RRAGMAAPLDGVTVDTRNPERMASDAERARRMGFGGKLCIHPAQVPVLHAAFDPGEAAVA 240 Query: 236 WAEEVMAAVRASDGGAISLKGKMIDKPVILQAEKFLHQ 273 A V A++ + GG L G+M+D PV+ QA + L + Sbjct: 241 HARRVQQAMQEAGGGVCVLDGRMVDAPVLAQARQTLER 278 >ref|YP_002943939.1| HpcH/HpaI aldolase [Variovorax paradoxus S110] gb|ACS18673.1| HpcH/HpaI aldolase [Variovorax paradoxus S110] Length = 295 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 135/263 (51%), Positives = 171/263 (65%), Gaps = 6/263 (2%) Query: 14 VPANRPERYAKALESGADAVIVDLEDAVALPQKEEARATLARWLRGNGP--QPRLWVRIN 71 VPA+RPER+A+AL +GA VIVDLEDAVA +K AR LA + RL VRIN Sbjct: 15 VPADRPERHARALATGAGGVIVDLEDAVAPERKAAAREGLAASFAALPAAGRQRLLVRIN 74 Query: 72 AADTVWHGDDLLTFSALSM----AGIVLPKAEEAKTLSSIARRLGPGRGLIALIESAAGL 127 AA T WH DD + L + AG+VLPKAE L +A +GP L+ L+ESAAGL Sbjct: 75 AAGTPWHEDDCAAVAGLVLQGLIAGVVLPKAERGGDLRLLAEAIGPRGVLVPLVESAAGL 134 Query: 128 AAMREIAAVPGVQRLAFGSIDAQVDLGMQCGPEEEELMHFRMEMVMASRLAGIAPPIDGV 187 AA+ E+AA P V RLAFG++D Q D+G+ C +E EL+ R+ +++ASR AG+ PIDGV Sbjct: 135 AAVDELAAAPQVLRLAFGNLDFQADVGLACDADEAELVPVRLALLLASRRAGLPAPIDGV 194 Query: 188 TTDFNDDAFLARMVQRARRMGFGAKLCIHPKQVEGVRRGFMPGEQELAWAEEVMAAVRAS 247 T D+ D LA RARR GFGAKLCIHP QV V+ P + ELAWA V+ AVR++ Sbjct: 195 TADWRDAQRLAADTARARRGGFGAKLCIHPDQVAPVQAALGPSDSELAWARRVIEAVRSA 254 Query: 248 DGGAISLKGKMIDKPVILQAEKF 270 GG SL G+M+D PV+ AE+ Sbjct: 255 GGGVASLDGRMVDAPVVRLAERL 277