BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0399.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase ... 684 0.0 ref|YP_982370.1| L-carnitine dehydratase/bile acid-inducible pro... 568 e-160 ref|ZP_03697173.1| L-carnitine dehydratase/bile acid-inducible p... 567 e-160 ref|YP_004618775.1| formyl-coenzyme A transferase [Ramlibacter t... 561 e-158 ref|YP_003166900.1| L-carnitine dehydratase/bile acid-inducible ... 557 e-156 >ref|YP_003776200.1| acyl-CoA transferases/carnitine dehydratase [Herbaspirillum seropedicae SmR1] gb|ADJ64292.1| acyl-CoA transferases/carnitine dehydratase protein [Herbaspirillum seropedicae SmR1] Length = 399 Score = 684 bits (1765), Expect = 0.0, Method: Composition-based stats. Identities = 354/399 (88%), Positives = 373/399 (93%), Gaps = 3/399 (0%) Query: 1 MSHANRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSS 60 MS ++RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYD+RVNGLSS Sbjct: 1 MSPSHRPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDSRVNGLSS 60 Query: 61 HFVWTNRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPG 120 HFVWTNRSKESLTLNLKDEEG+RII QLL +ADVLVQNLAPGAAAGLGLSA+ LHA+HP Sbjct: 61 HFVWTNRSKESLTLNLKDEEGRRIIDQLLQQADVLVQNLAPGAAAGLGLSAQALHARHPR 120 Query: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSN 180 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPD+VVKAGCSIADIAAGMYAYSN Sbjct: 121 LIVCDISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDDVVKAGCSIADIAAGMYAYSN 180 Query: 181 ILAALIKRGRDGRG---SHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYG 237 ILAALIKRGR+GR SHIDLSMLE+L EWMSFPLYYAYQGASAP RSGAEHATIYPYG Sbjct: 181 ILAALIKRGREGREGRGSHIDLSMLESLAEWMSFPLYYAYQGASAPLRSGAEHATIYPYG 240 Query: 238 PFKAGDGKTVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMF 297 PF AGDGKTVMLGLQNEREWKVFCE VLQDAALA D RFSSNARRHEHR+ LRQ IL +F Sbjct: 241 PFSAGDGKTVMLGLQNEREWKVFCEQVLQDAALASDARFSSNARRHEHRDVLRQLILDVF 300 Query: 298 ADMSAEQVVARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGAND 357 A +SAEQV ARLD+AQIANARVNTMQELWQHPQLAAR+RWTEV TP GKVAALLPPGAND Sbjct: 301 AGLSAEQVAARLDEAQIANARVNTMQELWQHPQLAARQRWTEVATPVGKVAALLPPGAND 360 Query: 358 SFDYRMEAIPALGQHTEAILARLGYDAAAITALRERGAV 396 S+DYRMEAIPALGQHTE+IL+ LGY+A I ALRERGAV Sbjct: 361 SYDYRMEAIPALGQHTESILSALGYEAGQIAALRERGAV 399 >ref|YP_982370.1| L-carnitine dehydratase/bile acid-inducible protein F [Polaromonas naphthalenivorans CJ2] gb|ABM37449.1| L-carnitine dehydratase/bile acid-inducible protein F [Polaromonas naphthalenivorans CJ2] Length = 393 Score = 568 bits (1464), Expect = e-160, Method: Composition-based stats. Identities = 283/391 (72%), Positives = 327/391 (83%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFCTRQLADLGARVIK+ERPGVGDFAR YD+RV G +SHFVWT Sbjct: 3 RPLDGITVVSLEHAIAAPFCTRQLADLGARVIKVERPGVGDFARAYDSRVKGQASHFVWT 62 Query: 66 NRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVCD 125 NRSKESLTL+LK + + LLG+ADVLVQNLAPGAAA +GLS + L HP LIVCD Sbjct: 63 NRSKESLTLDLKQPDALAALKDLLGQADVLVQNLAPGAAARMGLSFEALSQLHPKLIVCD 122 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYGEDGPYRDKKAYDLLIQSEAG LS+TGTPDE KAG S+ADIAAGMYAY+ IL+AL Sbjct: 123 ISGYGEDGPYRDKKAYDLLIQSEAGMLSITGTPDEPSKAGNSMADIAAGMYAYTGILSAL 182 Query: 186 IKRGRDGRGSHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYGPFKAGDGK 245 + R + G+GSHID+SMLE+L EWM +PLYYA++GA P R+ A HA+IYPYGPF+AGDG Sbjct: 183 LLRAKTGQGSHIDVSMLESLAEWMGYPLYYAFEGAPPPPRTAASHASIYPYGPFQAGDGG 242 Query: 246 TVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMFADMSAEQV 305 TVMLGLQNEREWK+FCEVVLQDA LA D RF SNA+R+EHREAL+ IL FA ++ +V Sbjct: 243 TVMLGLQNEREWKLFCEVVLQDAGLAGDARFDSNAKRNEHREALKAIILATFASLNTAEV 302 Query: 306 VARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGANDSFDYRMEA 365 VARLD+AQIANAR+N+M E+W HPQL ARERW V +PAG + ALLPPG N+SFDYRM+A Sbjct: 303 VARLDKAQIANARMNSMAEVWAHPQLKARERWQSVGSPAGAIPALLPPGRNNSFDYRMDA 362 Query: 366 IPALGQHTEAILARLGYDAAAITALRERGAV 396 IPA+GQHT+AIL LG AI LR GA+ Sbjct: 363 IPAVGQHTDAILRELGQGDEAIARLRAAGAI 393 >ref|ZP_03697173.1| L-carnitine dehydratase/bile acid-inducible protein F [Lutiella nitroferrum 2002] gb|EEG09659.1| L-carnitine dehydratase/bile acid-inducible protein F [Lutiella nitroferrum 2002] Length = 392 Score = 567 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 272/391 (69%), Positives = 325/391 (83%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVWT 65 RPLEGITV++LEHAIAAPFCTRQLADLGARVIKIERP VGDFAR YD RV GL+SHFVW+ Sbjct: 2 RPLEGITVVTLEHAIAAPFCTRQLADLGARVIKIERPRVGDFARAYDERVRGLASHFVWS 61 Query: 66 NRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVCD 125 NRSKESLTL++K E ++++G+LL +ADVLVQNLAPGAAA LGLS + L KHPGLIVCD Sbjct: 62 NRSKESLTLDVKHPEAQKLLGKLLEQADVLVQNLAPGAAARLGLSYEALCDKHPGLIVCD 121 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG DGPYRDKKAYDLLIQSE+GFLS+TG+PDE KAGCSIADI+AGMYAY+NILAAL Sbjct: 122 ISGYGADGPYRDKKAYDLLIQSESGFLSITGSPDEPAKAGCSIADISAGMYAYTNILAAL 181 Query: 186 IKRGRDGRGSHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYGPFKAGDGK 245 ++R R +G ID+SMLE++ EWMS+PLYYA+ GA+ P R+GA HATIYPYGPF+AGDGK Sbjct: 182 LQRARTQKGCQIDVSMLESMVEWMSYPLYYAFDGATPPPRAGAAHATIYPYGPFQAGDGK 241 Query: 246 TVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMFADMSAEQV 305 TVMLGLQNEREW FC+ VL LA D RFSSN++R R LR I+ +F+ ++A+QV Sbjct: 242 TVMLGLQNEREWGTFCDKVLDKPELAHDPRFSSNSKRVAARNELRALIIDVFSGLTADQV 301 Query: 306 VARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGANDSFDYRMEA 365 +A+LD AQIANA +N M ++WQHPQL AR+RWTEV+TPAG + ALLPPG D+F+ RM+ Sbjct: 302 IAKLDNAQIANAHMNDMHDVWQHPQLKARQRWTEVNTPAGPIPALLPPGKTDAFEPRMDP 361 Query: 366 IPALGQHTEAILARLGYDAAAITALRERGAV 396 +PALG+HTE IL LG A I+ L E G + Sbjct: 362 VPALGEHTEIILQELGCSADDISRLHEAGVI 392 >ref|YP_004618775.1| formyl-coenzyme A transferase [Ramlibacter tataouinensis TTB310] gb|AEG92756.1| formyl-coenzyme A transferase (Formyl-CoA transferase)-like protein [Ramlibacter tataouinensis TTB310] Length = 392 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 287/391 (73%), Positives = 321/391 (82%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVWT 65 RPL+GITV+SLEHAIAAPFCTRQLADLGARVIK+ERPG GDFAR YD R GL+SHFVW Sbjct: 2 RPLDGITVVSLEHAIAAPFCTRQLADLGARVIKVERPGGGDFARDYDQRTKGLASHFVWV 61 Query: 66 NRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVCD 125 NRSKESLTL+LK + QL+G ADVLVQNLAPGAAA +GLS L +HPGLIVCD Sbjct: 62 NRSKESLTLDLKQPAALAALKQLVGRADVLVQNLAPGAAARMGLSYAELSPQHPGLIVCD 121 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG DGPYRDKKAYDLLIQSEAGFLSVTGTP+E K+G SIADIAAGMYAY+++LAAL Sbjct: 122 ISGYGGDGPYRDKKAYDLLIQSEAGFLSVTGTPEEPCKSGNSIADIAAGMYAYTSVLAAL 181 Query: 186 IKRGRDGRGSHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYGPFKAGDGK 245 ++RGR GRGSHID+SMLE+L EWM FPLYYAY+GA P RS A HATIYPYGPF AGDG Sbjct: 182 LQRGRTGRGSHIDVSMLESLAEWMGFPLYYAYEGAPPPPRSAASHATIYPYGPFAAGDGG 241 Query: 246 TVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMFADMSAEQV 305 TVMLGLQNEREWK+FC+ VL ALA D RFSSNARR+EHREAL+ IL F M+A QV Sbjct: 242 TVMLGLQNEREWKLFCDKVLLQPALADDPRFSSNARRNEHREALKALILEAFGGMTAAQV 301 Query: 306 VARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGANDSFDYRMEA 365 +ARLD+A IANAR+N M E+W HPQLAAR R VD+PAG +AALLPPG N SFDYRM+A Sbjct: 302 IARLDEAGIANARMNGMAEVWAHPQLAARGRLARVDSPAGPLAALLPPGVNSSFDYRMDA 361 Query: 366 IPALGQHTEAILARLGYDAAAITALRERGAV 396 IPA+GQHTEAIL LG A I L+ A+ Sbjct: 362 IPAVGQHTEAILRELGLGEAQIRTLQGSRAI 392 >ref|YP_003166900.1| L-carnitine dehydratase/bile acid-inducible protein F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gb|ACV34971.1| L-carnitine dehydratase/bile acid-inducible protein F [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 392 Score = 557 bits (1436), Expect = e-156, Method: Composition-based stats. Identities = 277/391 (70%), Positives = 325/391 (83%) Query: 6 RPLEGITVISLEHAIAAPFCTRQLADLGARVIKIERPGVGDFARGYDTRVNGLSSHFVWT 65 RPL+GITV++LEHAIAAPFCTRQLADLGARVIK+ERP GDFAR YD RV GL+SHFVWT Sbjct: 2 RPLDGITVVTLEHAIAAPFCTRQLADLGARVIKVERPVTGDFARAYDERVRGLASHFVWT 61 Query: 66 NRSKESLTLNLKDEEGKRIIGQLLGEADVLVQNLAPGAAAGLGLSAKTLHAKHPGLIVCD 125 NRSKESLTL++K E I+ +LL +ADVLVQNLAPGAAA LGLS + L +HP LIVCD Sbjct: 62 NRSKESLTLDVKHAEAAGILARLLEQADVLVQNLAPGAAARLGLSYEVLREQHPRLIVCD 121 Query: 126 ISGYGEDGPYRDKKAYDLLIQSEAGFLSVTGTPDEVVKAGCSIADIAAGMYAYSNILAAL 185 ISGYG GPYRDKKAYDLLIQSE+GFLS+TG+PD KAGCSIADIAAGMYAYSNILAAL Sbjct: 122 ISGYGASGPYRDKKAYDLLIQSESGFLSITGSPDAPAKAGCSIADIAAGMYAYSNILAAL 181 Query: 186 IKRGRDGRGSHIDLSMLEALTEWMSFPLYYAYQGASAPGRSGAEHATIYPYGPFKAGDGK 245 ++RGR GRG HI++SMLE++ EWMS+PLYYA+ GA+ P R+GA HATI PYGPF AGDGK Sbjct: 182 LQRGRSGRGCHIEVSMLESMVEWMSYPLYYAFDGATPPPRAGAAHATITPYGPFTAGDGK 241 Query: 246 TVMLGLQNEREWKVFCEVVLQDAALAIDERFSSNARRHEHREALRQRILGMFADMSAEQV 305 TVMLGLQNEREW+VFC VL+ LA D RFSS++RR +R+ L I+ FA +S+EQ+ Sbjct: 242 TVMLGLQNEREWEVFCRAVLERPELAADPRFSSSSRRTANRQELEALIVASFASLSSEQL 301 Query: 306 VARLDQAQIANARVNTMQELWQHPQLAARERWTEVDTPAGKVAALLPPGANDSFDYRMEA 365 + RLD AQIANAR+N M ++W+HPQL AR RW EV TPAG + ALLPPGA D+F RM+A Sbjct: 302 IGRLDAAQIANARMNDMHDVWEHPQLRARGRWAEVATPAGPIPALLPPGAVDAFTPRMDA 361 Query: 366 IPALGQHTEAILARLGYDAAAITALRERGAV 396 +PALGQHT+AIL LG+DAAAI LR+ GA+ Sbjct: 362 VPALGQHTDAILGELGWDAAAIERLRQAGAI 392