BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0398.p (388 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776201.1| acyl-CoA dehydrogenase [Herbaspirillum serop... 716 0.0 ref|YP_002943229.1| acyl-CoA dehydrogenase domain-containing pro... 714 0.0 ref|YP_004153736.1| acyL-CoA dehydrogenase domain-containing pro... 713 0.0 ref|YP_002501849.1| acyl-CoA dehydrogenase domain-containing pro... 699 0.0 ref|YP_001890273.1| acyl-CoA dehydrogenase domain-containing pro... 692 0.0 >ref|YP_003776201.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] gb|ADJ64293.1| acyl-CoA dehydrogenase protein [Herbaspirillum seropedicae SmR1] Length = 388 Score = 716 bits (1849), Expect = 0.0, Method: Composition-based stats. Identities = 354/388 (91%), Positives = 375/388 (96%) Query: 1 MSYQAIPDTYTDLRDAVRDLCQTFPAEYWRKIDEARGYPEQFVDALTKAGWMAALIPQEY 60 MSY D++ DLRDAVRDLC+TFP EYWRKIDEARGYPEQFVDALTKAGW+AALIPQEY Sbjct: 1 MSYPTASDSHADLRDAVRDLCKTFPPEYWRKIDEARGYPEQFVDALTKAGWLAALIPQEY 60 Query: 61 GGSGLGLTEASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSERQKQQYLPKIASGELRL 120 GGSGLGLTEASVIMEEINRTGGNSGACHGQMYNMGTLLRHGS QK++YLP+IASGELRL Sbjct: 61 GGSGLGLTEASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSPEQKERYLPRIASGELRL 120 Query: 121 QSMGVTEPTTGTDTTRVKTVAVKKGDRYVVNGQKVWISRVQHSDLMILLARTTPLDQVKK 180 QSM VTEPTTGTDTTR+KTVAVKKGDRYV+NGQKVWISRVQHSDLMILLARTTPL+QV + Sbjct: 121 QSMAVTEPTTGTDTTRIKTVAVKKGDRYVINGQKVWISRVQHSDLMILLARTTPLEQVSR 180 Query: 181 KSEGMSIFLVDLREAIGKGLEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYIL 240 KSEGMSIFLVDL+EAIG G+EVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYIL Sbjct: 181 KSEGMSIFLVDLKEAIGHGMEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYIL 240 Query: 241 DGLNAERTLIAAECIGDGYWFIDKASAYAKERVVFDRPIGMNQGVQFPIADAYIEIEAAN 300 DGLNAERTLIAAECIGDGYWFIDKA+ YA+ERVVFDRPIGMNQGVQFP+A+AYIE+EAAN Sbjct: 241 DGLNAERTLIAAECIGDGYWFIDKATQYARERVVFDRPIGMNQGVQFPLAEAYIEVEAAN 300 Query: 301 LMRYQACALFDAHQNCGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRET 360 LMRYQACALFDA Q+CGAQANMAKYLAAKA+WEAANVCLQTHGGFGFACEYDVERKFRET Sbjct: 301 LMRYQACALFDAQQSCGAQANMAKYLAAKAAWEAANVCLQTHGGFGFACEYDVERKFRET 360 Query: 361 RLYQVAPISTNLIFSYVAEHILGLPRSF 388 RLYQVAPISTNLIFSYVAEH+LGLPRSF Sbjct: 361 RLYQVAPISTNLIFSYVAEHVLGLPRSF 388 >ref|YP_002943229.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus S110] gb|ACS17963.1| acyl-CoA dehydrogenase domain protein [Variovorax paradoxus S110] Length = 387 Score = 714 bits (1842), Expect = 0.0, Method: Composition-based stats. Identities = 334/379 (88%), Positives = 359/379 (94%) Query: 10 YTDLRDAVRDLCQTFPAEYWRKIDEARGYPEQFVDALTKAGWMAALIPQEYGGSGLGLTE 69 + D+RDAVRDLC FP EY+RKIDEARGYP +FVDALTKAGWMAALIPQEYGGSGLGLTE Sbjct: 9 FADIRDAVRDLCAQFPNEYFRKIDEARGYPAEFVDALTKAGWMAALIPQEYGGSGLGLTE 68 Query: 70 ASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSERQKQQYLPKIASGELRLQSMGVTEPT 129 ASVIMEEINR+GGNSGACHGQMYNMGTLLRHGSE QK+ YLP+IA+GELRLQSMGVTEP+ Sbjct: 69 ASVIMEEINRSGGNSGACHGQMYNMGTLLRHGSEAQKRNYLPRIATGELRLQSMGVTEPS 128 Query: 130 TGTDTTRVKTVAVKKGDRYVVNGQKVWISRVQHSDLMILLARTTPLDQVKKKSEGMSIFL 189 TGTDTTR+KT AVKKGDRYVVNGQKVWISR+QHSDLMILLARTTPL +VKKKSEGMSIF+ Sbjct: 129 TGTDTTRIKTTAVKKGDRYVVNGQKVWISRIQHSDLMILLARTTPLAEVKKKSEGMSIFI 188 Query: 190 VDLREAIGKGLEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYILDGLNAERTL 249 VDLREAIG+G+ VRPILNMVNHETNELFF+NLEIPAENLIGEEG+GF+YILDGLNAERTL Sbjct: 189 VDLREAIGQGMTVRPILNMVNHETNELFFENLEIPAENLIGEEGQGFKYILDGLNAERTL 248 Query: 250 IAAECIGDGYWFIDKASAYAKERVVFDRPIGMNQGVQFPIADAYIEIEAANLMRYQACAL 309 IAAECIGDGYWFIDK +AY KERVVF RPIG NQGVQFPIA+A+IEIEAANLMRY+AC L Sbjct: 249 IAAECIGDGYWFIDKVTAYTKERVVFGRPIGQNQGVQFPIAEAFIEIEAANLMRYEACRL 308 Query: 310 FDAHQNCGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRETRLYQVAPIS 369 FDA + CGAQANMAKYLAAKASWEAAN CLQ HGGFGFACEYD+ERKFRETRLYQVAPIS Sbjct: 309 FDAREPCGAQANMAKYLAAKASWEAANACLQFHGGFGFACEYDIERKFRETRLYQVAPIS 368 Query: 370 TNLIFSYVAEHILGLPRSF 388 TNLI SYVAEH+LGLPRSF Sbjct: 369 TNLILSYVAEHMLGLPRSF 387 >ref|YP_004153736.1| acyL-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] gb|ADU35625.1| acyl-CoA dehydrogenase domain-containing protein [Variovorax paradoxus EPS] Length = 388 Score = 713 bits (1841), Expect = 0.0, Method: Composition-based stats. Identities = 332/379 (87%), Positives = 358/379 (94%) Query: 10 YTDLRDAVRDLCQTFPAEYWRKIDEARGYPEQFVDALTKAGWMAALIPQEYGGSGLGLTE 69 + D+RDAVRDLC FP EY+RKIDEARGYP +FVDALTKAGWMAALIPQEYGGSGLGLTE Sbjct: 10 FPDIRDAVRDLCAEFPNEYFRKIDEARGYPAEFVDALTKAGWMAALIPQEYGGSGLGLTE 69 Query: 70 ASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSERQKQQYLPKIASGELRLQSMGVTEPT 129 ASVIMEEINR GGNSGACHGQMYNMGTLLRHGSE QK++YLP+IA+GELRLQSMGVTEP+ Sbjct: 70 ASVIMEEINRCGGNSGACHGQMYNMGTLLRHGSEAQKREYLPRIATGELRLQSMGVTEPS 129 Query: 130 TGTDTTRVKTVAVKKGDRYVVNGQKVWISRVQHSDLMILLARTTPLDQVKKKSEGMSIFL 189 TGTDTT++KT AVKKGDRYV+NGQKVWISR+QHSDLMILLARTTPL VKKKSEGMSIF+ Sbjct: 130 TGTDTTKIKTTAVKKGDRYVINGQKVWISRIQHSDLMILLARTTPLADVKKKSEGMSIFI 189 Query: 190 VDLREAIGKGLEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYILDGLNAERTL 249 VDLREAIGKG+ V+PILNMVNHETNELFF+NLEIPAENLIG EG+GF+YILDGLNAERTL Sbjct: 190 VDLREAIGKGMTVQPILNMVNHETNELFFENLEIPAENLIGVEGQGFKYILDGLNAERTL 249 Query: 250 IAAECIGDGYWFIDKASAYAKERVVFDRPIGMNQGVQFPIADAYIEIEAANLMRYQACAL 309 IAAECIGDGYWFIDK +AY KERVVF RPIG NQGVQFPIA+A+IEIEAANLMRY+AC L Sbjct: 250 IAAECIGDGYWFIDKVTAYTKERVVFGRPIGQNQGVQFPIAEAFIEIEAANLMRYEACRL 309 Query: 310 FDAHQNCGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRETRLYQVAPIS 369 FDAH+ CGAQANMAKYLAAKASWEAAN CLQ HGGFGFACEYD+ERKFRETRLYQVAPIS Sbjct: 310 FDAHEPCGAQANMAKYLAAKASWEAANACLQFHGGFGFACEYDIERKFRETRLYQVAPIS 369 Query: 370 TNLIFSYVAEHILGLPRSF 388 TNLI SYVAEH+LGLPRSF Sbjct: 370 TNLILSYVAEHMLGLPRSF 388 >ref|YP_002501849.1| acyl-CoA dehydrogenase domain-containing protein [Methylobacterium nodulans ORS 2060] gb|ACL61546.1| acyl-CoA dehydrogenase domain protein [Methylobacterium nodulans ORS 2060] Length = 387 Score = 699 bits (1805), Expect = 0.0, Method: Composition-based stats. Identities = 327/379 (86%), Positives = 354/379 (93%) Query: 10 YTDLRDAVRDLCQTFPAEYWRKIDEARGYPEQFVDALTKAGWMAALIPQEYGGSGLGLTE 69 + D+RDAVR LC FP EY R+IDEARGYPE FVDALTKAGWMAALIP+EYGGSGLGLTE Sbjct: 9 HQDIRDAVRALCAEFPPEYHRRIDEARGYPEAFVDALTKAGWMAALIPEEYGGSGLGLTE 68 Query: 70 ASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSERQKQQYLPKIASGELRLQSMGVTEPT 129 ASVIMEEINR+GGNSGACHGQMYNM TL+RHGSE Q+Q+YLP+IA+GELRLQSMGVTEPT Sbjct: 69 ASVIMEEINRSGGNSGACHGQMYNMNTLVRHGSEEQRQKYLPRIAAGELRLQSMGVTEPT 128 Query: 130 TGTDTTRVKTVAVKKGDRYVVNGQKVWISRVQHSDLMILLARTTPLDQVKKKSEGMSIFL 189 GTDTTR+KT A++KGDRYV+NGQKVWISR+QHSDLMILLARTTPLDQV+KKSEGMSIFL Sbjct: 129 AGTDTTRIKTTALRKGDRYVINGQKVWISRIQHSDLMILLARTTPLDQVRKKSEGMSIFL 188 Query: 190 VDLREAIGKGLEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYILDGLNAERTL 249 VDL EA KG+ VRPILNMVNHETNELFFD+LEIPAENLIGEEG+GF+YIL GLNAERTL Sbjct: 189 VDLHEAQKKGMTVRPILNMVNHETNELFFDDLEIPAENLIGEEGQGFKYILTGLNAERTL 248 Query: 250 IAAECIGDGYWFIDKASAYAKERVVFDRPIGMNQGVQFPIADAYIEIEAANLMRYQACAL 309 IAAECIGDGYWFIDK SAYAKER VF RPIG NQGVQFPIA+++IE+EAANLMRY+AC L Sbjct: 249 IAAECIGDGYWFIDKVSAYAKERKVFGRPIGQNQGVQFPIAESFIEVEAANLMRYEACRL 308 Query: 310 FDAHQNCGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRETRLYQVAPIS 369 +DAHQ CGAQANMAKYLAAKASWEAAN C+Q HGGFGFACEYDVERKFRETRLYQVAPIS Sbjct: 309 YDAHQPCGAQANMAKYLAAKASWEAANACIQFHGGFGFACEYDVERKFRETRLYQVAPIS 368 Query: 370 TNLIFSYVAEHILGLPRSF 388 TNLI SYVAEHILGLPRSF Sbjct: 369 TNLILSYVAEHILGLPRSF 387 >ref|YP_001890273.1| acyl-CoA dehydrogenase domain-containing protein [Burkholderia phytofirmans PsJN] gb|ACD20902.1| acyl-CoA dehydrogenase domain protein [Burkholderia phytofirmans PsJN] Length = 387 Score = 692 bits (1785), Expect = 0.0, Method: Composition-based stats. Identities = 322/381 (84%), Positives = 353/381 (92%) Query: 8 DTYTDLRDAVRDLCQTFPAEYWRKIDEARGYPEQFVDALTKAGWMAALIPQEYGGSGLGL 67 D++ D+R+AVRDLCQ F EY+RKIDEARGYPE+FVDALTKAGW+AALIPQ++GGSGLGL Sbjct: 7 DSFQDIREAVRDLCQQFSGEYFRKIDEARGYPEEFVDALTKAGWLAALIPQDFGGSGLGL 66 Query: 68 TEASVIMEEINRTGGNSGACHGQMYNMGTLLRHGSERQKQQYLPKIASGELRLQSMGVTE 127 TEASVIMEEINR GGNSGACHGQMYNMGTLLRHGSE QKQ+YLPKIA G+LRLQSMGVTE Sbjct: 67 TEASVIMEEINRAGGNSGACHGQMYNMGTLLRHGSEEQKQKYLPKIACGDLRLQSMGVTE 126 Query: 128 PTTGTDTTRVKTVAVKKGDRYVVNGQKVWISRVQHSDLMILLARTTPLDQVKKKSEGMSI 187 P+TGTDTT++KT A ++GDRYV+NGQKVWISRVQHSDLMILLARTTPL VKKKSEGMSI Sbjct: 127 PSTGTDTTKIKTTAERRGDRYVINGQKVWISRVQHSDLMILLARTTPLADVKKKSEGMSI 186 Query: 188 FLVDLREAIGKGLEVRPILNMVNHETNELFFDNLEIPAENLIGEEGRGFRYILDGLNAER 247 F+VDLREAIG G+ V+PILNMVNHETNELFFDNLEIPAENLIGEEG+GF+YILDGLNAER Sbjct: 187 FIVDLREAIGHGMTVQPILNMVNHETNELFFDNLEIPAENLIGEEGQGFKYILDGLNAER 246 Query: 248 TLIAAECIGDGYWFIDKASAYAKERVVFDRPIGMNQGVQFPIADAYIEIEAANLMRYQAC 307 TLIAAECIGDGYWF+DK + YAKERVVF RPIG NQGVQFPIA +++ +EAA+LMR++A Sbjct: 247 TLIAAECIGDGYWFVDKVTEYAKERVVFGRPIGQNQGVQFPIARSFVNVEAASLMRFEAA 306 Query: 308 ALFDAHQNCGAQANMAKYLAAKASWEAANVCLQTHGGFGFACEYDVERKFRETRLYQVAP 367 FDAHQ CGAQANMAK LAA ASWEAAN CLQ HGGFGFACEYDVERKFRETRLYQVAP Sbjct: 307 RRFDAHQPCGAQANMAKLLAADASWEAANACLQFHGGFGFACEYDVERKFRETRLYQVAP 366 Query: 368 ISTNLIFSYVAEHILGLPRSF 388 ISTNLI SYVAEHILGLPRSF Sbjct: 367 ISTNLILSYVAEHILGLPRSF 387