BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0396.p (323 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776203.1| LysR family transcription regulator protein ... 535 e-150 gb|AEA83621.1| LysR family transcriptional regulator [Pseudomona... 338 7e-91 ref|YP_004713972.1| LysR family transcriptional regulator [Pseud... 338 1e-90 ref|YP_001349981.1| transcriptional regulator [Pseudomonas aerug... 334 1e-89 ref|ZP_06880244.1| putative transcriptional regulator [Pseudomon... 333 3e-89 >ref|YP_003776203.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64295.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 321 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 278/308 (90%), Positives = 292/308 (94%) Query: 12 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 71 MLFDLTDLRLFILIAE NSLTRSAERMNLSL ATSNRIKELETRFGTRLLYRESKGVQLT Sbjct: 1 MLFDLTDLRLFILIAEHNSLTRSAERMNLSLGATSNRIKELETRFGTRLLYRESKGVQLT 60 Query: 72 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 131 PAGHTLLHHAQ FMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP Sbjct: 61 PAGHTLLHHAQQFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 120 Query: 132 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 191 QVNV+LEERLNHDILRGIQEGTADIGIVAGPVQG+GLQ+LNFSTDRLVLATALEHPLA A Sbjct: 121 QVNVALEERLNHDILRGIQEGTADIGIVAGPVQGEGLQILNFSTDRLVLATALEHPLADA 180 Query: 192 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQSLKLRIQVRSFEAMCRMIETNVGIG 251 S+PF TLEYEHIGLHEGSTLHHFL+KIV+E GQ LKLRIQVRSFEAMCRMIETNVGIG Sbjct: 181 PSLPFIQTLEYEHIGLHEGSTLHHFLSKIVAENGQRLKLRIQVRSFEAMCRMIETNVGIG 240 Query: 252 IVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLVDFIREQMAQESD 311 I+PRSAAQRHQQTMQL+VVELSDPWSVRERSMV Q++DTLSPHARNLV+FIREQ AQ ++ Sbjct: 241 ILPRSAAQRHQQTMQLSVVELSDPWSVRERSMVVQDIDTLSPHARNLVEFIREQTAQGAE 300 Query: 312 EDKLAAHA 319 +D L A Sbjct: 301 DDALVPGA 308 >gb|AEA83621.1| LysR family transcriptional regulator [Pseudomonas stutzeri DSM 4166] Length = 297 Score = 338 bits (867), Expect = 7e-91, Method: Composition-based stats. Identities = 175/288 (60%), Positives = 218/288 (75%) Query: 12 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 71 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LE +F +RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEAQFDSRLLYRDSRGVELT 60 Query: 72 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 131 PAGH LL HA+L M+QV++LKS+ +Y G+IRIFANTTAVTEF+PE+L FLA P Sbjct: 61 PAGHKLLQHARLIMRQVDYLKSEFAEYGTDSAGHIRIFANTTAVTEFLPEVLAGFLAERP 120 Query: 132 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 191 V V L+ERL+ DI+RG+ +G+ D+GI+AGPVQ +GLQVL+FSTDRL+LA + HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDMGIIAGPVQAEGLQVLHFSTDRLLLAVPVGHPLAGE 180 Query: 192 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQSLKLRIQVRSFEAMCRMIETNVGIG 251 V + TL Y+HIGLHEGSTL FL V + G L LRIQV SFEA+CRMIE VGIG Sbjct: 181 AQVTLRQTLAYQHIGLHEGSTLLTFLRDQVEKLGGQLSLRIQVSSFEAVCRMIEAGVGIG 240 Query: 252 IVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLV 299 I+P SAA+RH +TMQLA+V L +PW+VRERS++ + +D L R L+ Sbjct: 241 IIPESAARRHSRTMQLALVTLDEPWAVRERSILVRELDALPGSVRALI 288 >ref|YP_004713972.1| LysR family transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG 11199] gb|AEJ04883.1| LysR family transcriptional regulator [Pseudomonas stutzeri ATCC 17588 = LMG 11199] Length = 297 Score = 338 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 175/288 (60%), Positives = 218/288 (75%) Query: 12 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 71 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LE +F +RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEAQFDSRLLYRDSRGVELT 60 Query: 72 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 131 PAGH LL HA+L M+QV++LKS+ +Y G+IRIFANTTAVTEF+PE+L FLA P Sbjct: 61 PAGHKLLQHARLIMRQVDYLKSEFAEYGTDSAGHIRIFANTTAVTEFLPEVLAGFLAERP 120 Query: 132 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 191 V V L+ERL+ DI+RG+ +G+ D+GI+AGPVQ +GLQVL+FSTDRL+LA + HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDMGIIAGPVQAEGLQVLHFSTDRLLLAVPVGHPLAGE 180 Query: 192 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQSLKLRIQVRSFEAMCRMIETNVGIG 251 V + TL Y+HIGLHEGSTL FL V + G L LRIQV SFEA+CRMIE VGIG Sbjct: 181 AQVTLRQTLVYQHIGLHEGSTLLTFLRDQVEKLGGQLSLRIQVSSFEAVCRMIEAGVGIG 240 Query: 252 IVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLV 299 I+P SAA+RH +TMQLA+V L +PW+VRERS++ + +D L R L+ Sbjct: 241 IIPESAARRHSRTMQLALVTLDEPWAVRERSILVRELDALPGSVRALI 288 >ref|YP_001349981.1| transcriptional regulator [Pseudomonas aeruginosa PA7] gb|ABR81723.1| probable transcriptional regulator [Pseudomonas aeruginosa PA7] Length = 298 Score = 334 bits (856), Expect = 1e-89, Method: Composition-based stats. Identities = 170/289 (58%), Positives = 223/289 (77%) Query: 12 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 71 M FDL DLRLFI IAE SLT+ A R +LS AA S RIK LE + G+RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAHLSPAAASARIKALEGQLGSRLLYRDSRGVELT 60 Query: 72 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 131 PAG LL HA+L M+QVE+LKS+ +Y + G+IRIFANTTAVTEF+PEIL FLA P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 132 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 191 V+V L+ERL+ DI+RG+ +G+ D+GI+AGPV GLQVL+FSTDRLV+A HPLAG Sbjct: 121 GVSVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 192 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQSLKLRIQVRSFEAMCRMIETNVGIG 251 V +DTL+++HIGL EG+TLH FL + V + G+ L LRIQV SFEA+CRMIE VGIG Sbjct: 181 ARVRLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRIQVSSFEAICRMIEGGVGIG 240 Query: 252 IVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLVD 300 ++P+SAA+RH +TM+LA +EL +PW++RERS++ ++++ L R L++ Sbjct: 241 VIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCVRALIE 289 >ref|ZP_06880244.1| putative transcriptional regulator [Pseudomonas aeruginosa PAb1] gb|EGM18888.1| putative transcriptional regulator [Pseudomonas aeruginosa 152504] Length = 298 Score = 333 bits (853), Expect = 3e-89, Method: Composition-based stats. Identities = 169/289 (58%), Positives = 221/289 (76%) Query: 12 MLFDLTDLRLFILIAELNSLTRSAERMNLSLAATSNRIKELETRFGTRLLYRESKGVQLT 71 M FDL DLRLFI IAE SLT+ A R LS AA S R+K LE + G+RLLYR+S+GV+LT Sbjct: 1 MHFDLADLRLFIHIAESPSLTQGARRAFLSPAAASARVKALEGQLGSRLLYRDSRGVELT 60 Query: 72 PAGHTLLHHAQLFMQQVEHLKSDMQQYNNGIKGYIRIFANTTAVTEFMPEILGKFLARHP 131 PAG LL HA+L M+QVE+LKS+ +Y + G+IRIFANTTAVTEF+PEIL FLA P Sbjct: 61 PAGQRLLQHARLIMRQVEYLKSEFTEYGSDAAGHIRIFANTTAVTEFLPEILAGFLAARP 120 Query: 132 QVNVSLEERLNHDILRGIQEGTADIGIVAGPVQGDGLQVLNFSTDRLVLATALEHPLAGA 191 V V L+ERL+ DI+RG+ +G+ D+GI+AGPV GLQVL+FSTDRLV+A HPLAG Sbjct: 121 GVTVDLQERLSRDIVRGVLDGSTDLGIIAGPVAASGLQVLHFSTDRLVMAVPQGHPLAGQ 180 Query: 192 GSVPFQDTLEYEHIGLHEGSTLHHFLNKIVSEQGQSLKLRIQVRSFEAMCRMIETNVGIG 251 V +DTL+++HIGL EG+TLH FL + V + G+ L LRIQV SFEA+CRMIE VGIG Sbjct: 181 ARVSLRDTLQFQHIGLPEGTTLHAFLYERVEQMGEQLSLRIQVSSFEAICRMIEGGVGIG 240 Query: 252 IVPRSAAQRHQQTMQLAVVELSDPWSVRERSMVFQNMDTLSPHARNLVD 300 ++P+SAA+RH +TM+LA +EL +PW++RERS++ ++++ L R L++ Sbjct: 241 VIPQSAARRHSRTMKLATIELDEPWAIRERSLLVRDLEALPSCLRALIE 289