BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0394.p (271 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776204.1| transmembrane permease [Herbaspirillum serop... 340 2e-91 ref|YP_003882273.1| hypothetical protein Dda3937_00781 [Dickeya ... 209 3e-52 ref|YP_585970.1| hypothetical protein Rmet_3831 [Cupriavidus met... 205 5e-51 ref|YP_003005075.1| hypothetical protein Dd1591_2772 [Dickeya ze... 198 7e-49 ref|YP_003332915.1| hypothetical protein Dd586_1331 [Dickeya dad... 197 1e-48 >ref|YP_003776204.1| transmembrane permease [Herbaspirillum seropedicae SmR1] gb|ADJ64296.1| transmembrane permease protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 340 bits (871), Expect = 2e-91, Method: Composition-based stats. Identities = 220/254 (86%), Positives = 233/254 (91%) Query: 18 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTALVMIVPN 77 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGT+LVMIVPN Sbjct: 1 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTSLVMIVPN 60 Query: 78 VVIAFWRYKQRNHIQWSTAAMMCVPAVFTTYVSARIATAMAARSLHVCFAAFMGLLALYY 137 VVIAFWRYKQRN I+WSTAAMMC PAV TY SAR+ATA+ ARSLH CFA FM +LALYY Sbjct: 61 VVIAFWRYKQRNKIEWSTAAMMCAPAVVATYFSARLATAIDARSLHFCFAVFMAVLALYY 120 Query: 138 LWTLLRNKRSVESSVILSRRYIPLVGMAAGASAGFFSVGGAIVAVPLLTALFGVTQTAAQ 197 LWTLLR +V V+L RR+IP VG++AGASAGFFSVGGAIVAVPLLTA FG+TQTAAQ Sbjct: 121 LWTLLRRSPAVVRPVVLGRRWIPFVGLSAGASAGFFSVGGAIVAVPLLTAFFGMTQTAAQ 180 Query: 198 GLGLAMVTPGTLVALWTYAQAGHVDWSVGIPMALGGVLSISWGVALAHHLPERRLRILFC 257 GLGLAMVTPGTLVALWTYA AGHVDW+VGIPMALGGVLSISWGVALAHHLPERRLRILFC Sbjct: 181 GLGLAMVTPGTLVALWTYAHAGHVDWAVGIPMALGGVLSISWGVALAHHLPERRLRILFC 240 Query: 258 AALLLLSVWMMIAG 271 ALLLLSVWMM+ G Sbjct: 241 GALLLLSVWMMVGG 254 >ref|YP_003882273.1| hypothetical protein Dda3937_00781 [Dickeya dadantii 3937] gb|ADM97716.1| putative membrane protein [Dickeya dadantii 3937] Length = 254 Score = 209 bits (532), Expect = 3e-52, Method: Composition-based stats. Identities = 133/253 (52%), Positives = 180/253 (71%) Query: 18 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTALVMIVPN 77 MT+ L + V+ +LG LG GG+ GIGGGLIAIPVLG L+GM+Q LAQGTAL+MI PN Sbjct: 1 MTSLLMTNMVLCLILGMGLGVCGGMLGIGGGLIAIPVLGMLFGMNQHLAQGTALIMITPN 60 Query: 78 VVIAFWRYKQRNHIQWSTAAMMCVPAVFTTYVSARIATAMAARSLHVCFAAFMGLLALYY 137 V+I F RY+QRN I M+C A + Y +A IA+A+ +L FA F+ +LA YY Sbjct: 61 VLIGFLRYRQRNKIDTRMTLMLCAFATVSAYFAAHIASAIQVDNLQQAFAIFLLVLATYY 120 Query: 138 LWTLLRNKRSVESSVILSRRYIPLVGMAAGASAGFFSVGGAIVAVPLLTALFGVTQTAAQ 197 +W + ++RS + +LS+RY+P +G+A+G +G F+VGG +V VP L LFG TQT AQ Sbjct: 121 IWQWINSRRSRTPTSVLSKRYLPALGVASGFMSGIFTVGGGLVVVPALVTLFGFTQTQAQ 180 Query: 198 GLGLAMVTPGTLVALWTYAQAGHVDWSVGIPMALGGVLSISWGVALAHHLPERRLRILFC 257 G+ LA+V PG L AL +Y QAG+VDW+ GIP+A+GG+LS+SWGVALAH LP LR+ FC Sbjct: 181 GIALALVVPGALAALVSYTQAGYVDWATGIPLAIGGILSVSWGVALAHKLPVVALRLAFC 240 Query: 258 AALLLLSVWMMIA 270 L+ ++V M++A Sbjct: 241 LVLVGVAVVMLVA 253 >ref|YP_585970.1| hypothetical protein Rmet_3831 [Cupriavidus metallidurans CH34] gb|ABF10701.1| conserved hypothetical protein [Cupriavidus metallidurans CH34] Length = 277 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 126/221 (57%), Positives = 160/221 (72%) Query: 51 AIPVLGYLYGMDQQLAQGTALVMIVPNVVIAFWRYKQRNHIQWSTAAMMCVPAVFTTYVS 110 AIP LG LYGMDQQLAQGT+LVMI PNV+I FW+Y++R I+ TA ++ + AV TY S Sbjct: 57 AIPALGLLYGMDQQLAQGTSLVMIAPNVLIGFWQYRKRADIELKTAIVLGLSAVLATYAS 116 Query: 111 ARIATAMAARSLHVCFAAFMGLLALYYLWTLLRNKRSVESSVILSRRYIPLVGMAAGASA 170 A+ AT++ A L FA FM LALY+LW LL + + + LS +IP VG+ GA + Sbjct: 117 AKFATSIDAALLRRIFAVFMIGLALYFLWRLLPGRATTQPQARLSPSWIPAVGVVGGAFS 176 Query: 171 GFFSVGGAIVAVPLLTALFGVTQTAAQGLGLAMVTPGTLVALWTYAQAGHVDWSVGIPMA 230 GFFSVGG +VA P L LFG+ Q AAQGL LA+VTPG +VAL+TYA AGHVDW GIP++ Sbjct: 177 GFFSVGGGVVAAPALVGLFGMRQAAAQGLALALVTPGAVVALFTYANAGHVDWYSGIPLS 236 Query: 231 LGGVLSISWGVALAHHLPERRLRILFCAALLLLSVWMMIAG 271 LGG+L+ISWGVALAH +PER+LR F L+ +V M++ G Sbjct: 237 LGGMLTISWGVALAHRMPERKLRAAFALCLIATAVVMLVRG 277 >ref|YP_003005075.1| hypothetical protein Dd1591_2772 [Dickeya zeae Ech1591] gb|ACT07596.1| protein of unknown function DUF81 [Dickeya zeae Ech1591] Length = 254 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 133/251 (52%), Positives = 178/251 (70%) Query: 18 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTALVMIVPN 77 MT+ L + V+ +LG LG GG+ GIGGGLIAIPVLG L+GM+Q LAQGTAL+MI PN Sbjct: 1 MTSLLMTNMVLCLILGMGLGVCGGMLGIGGGLIAIPVLGMLFGMNQHLAQGTALIMITPN 60 Query: 78 VVIAFWRYKQRNHIQWSTAAMMCVPAVFTTYVSARIATAMAARSLHVCFAAFMGLLALYY 137 V+I F RY+QRN I M+C A + YV+A +A A+ +L FA F+ +LA YY Sbjct: 61 VLIGFLRYRQRNKIDTRMTLMLCAFATVSAYVAAHMAAAIQVDNLQQAFAIFLLVLATYY 120 Query: 138 LWTLLRNKRSVESSVILSRRYIPLVGMAAGASAGFFSVGGAIVAVPLLTALFGVTQTAAQ 197 +W + ++RS + +LS RY+P +G+A+G +G F+VGG +V VP L LFG TQT AQ Sbjct: 121 IWQWINSRRSRTPTSVLSHRYLPALGVASGFMSGIFTVGGGLVVVPALVTLFGFTQTQAQ 180 Query: 198 GLGLAMVTPGTLVALWTYAQAGHVDWSVGIPMALGGVLSISWGVALAHHLPERRLRILFC 257 G+ LA+V PG L AL +YAQAG+VDW+ GIP+A+GG+LS+SWGVALAH LP LR+ FC Sbjct: 181 GIALALVVPGALAALASYAQAGNVDWATGIPLAIGGILSVSWGVALAHKLPVVALRLAFC 240 Query: 258 AALLLLSVWMM 268 L+ ++V M+ Sbjct: 241 LVLVSVAVVML 251 >ref|YP_003332915.1| hypothetical protein Dd586_1331 [Dickeya dadantii Ech586] gb|ACZ76210.1| protein of unknown function DUF81 [Dickeya dadantii Ech586] Length = 254 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 131/253 (51%), Positives = 177/253 (69%) Query: 18 MTASLFFSGVVNFLLGGLLGAMGGLFGIGGGLIAIPVLGYLYGMDQQLAQGTALVMIVPN 77 MT+ L V +LG LG GG+ GIGGGLIAIPVLG L+GM+Q LAQGTAL+MI PN Sbjct: 1 MTSVLITQVAVCLILGMGLGVCGGMLGIGGGLIAIPVLGMLFGMNQHLAQGTALIMITPN 60 Query: 78 VVIAFWRYKQRNHIQWSTAAMMCVPAVFTTYVSARIATAMAARSLHVCFAAFMGLLALYY 137 V+I F RY+QRN I M+C A + Y++A +A A+ +L FA F+ +LA YY Sbjct: 61 VLIGFLRYRQRNKIDTRMTLMLCAFATVSAYIAAHMAAAIQVDNLQQAFAIFLLVLAAYY 120 Query: 138 LWTLLRNKRSVESSVILSRRYIPLVGMAAGASAGFFSVGGAIVAVPLLTALFGVTQTAAQ 197 +W + ++RS + +LS RY+P++G+A+G +G F+VGG +V VP L LFG TQT AQ Sbjct: 121 IWQWVNSQRSRTPTSVLSARYLPVLGVASGFMSGIFTVGGGLVVVPALVTLFGFTQTQAQ 180 Query: 198 GLGLAMVTPGTLVALWTYAQAGHVDWSVGIPMALGGVLSISWGVALAHHLPERRLRILFC 257 G+ LA+V PG L AL +Y QAG+VDW+ GIP+A+GG+LS+SWGVALAH LP LR+ FC Sbjct: 181 GIALALVVPGALAALVSYTQAGNVDWATGIPLAIGGILSVSWGVALAHKLPVVALRLTFC 240 Query: 258 AALLLLSVWMMIA 270 L+ ++V M++ Sbjct: 241 LVLVGVAVVMLVG 253