BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0387.p         (164 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773594.1| preprotein translocase subunit SecB protein ...   289   7e-77
ref|ZP_08272612.1| Protein export cytoplasm chaperone protein [O...   244   4e-63
ref|YP_001354909.1| preprotein translocase SecB subunit [Janthin...   241   3e-62
ref|YP_004754706.1| protein export cytoplasm chaperone protein [...   240   5e-62
ref|YP_001101203.1| preprotein translocase subunit SecB [Hermini...   233   5e-60

>ref|YP_003773594.1| preprotein translocase subunit SecB protein [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ61686.1| preprotein translocase subunit SecB protein [Herbaspirillum
           seropedicae SmR1]
          Length = 164

 Score =  289 bits (740), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 164/164 (100%), Positives = 164/164 (100%)

Query: 1   MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE 60
           MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE
Sbjct: 1   MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE 60

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA 120
           STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA
Sbjct: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA 120

Query: 121 ITRAGFPPVHLAEINFEVFYQQRLQALAEQQGATLVNNGSTAVN 164
           ITRAGFPPVHLAEINFEVFYQQRLQALAEQQGATLVNNGSTAVN
Sbjct: 121 ITRAGFPPVHLAEINFEVFYQQRLQALAEQQGATLVNNGSTAVN 164


>ref|ZP_08272612.1| Protein export cytoplasm chaperone protein [Oxalobacteraceae
           bacterium IMCC9480]
 gb|EGF33907.1| Protein export cytoplasm chaperone protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 162

 Score =  244 bits (622), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 129/143 (90%), Positives = 138/143 (96%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFESTVTITVTAK 70
           QP+FQIQRVYLKDLSLEQPNSPAIFLEQEAP++EV+VDVGAE LAEG+FESTVTITVTAK
Sbjct: 7   QPIFQIQRVYLKDLSLEQPNSPAIFLEQEAPTMEVAVDVGAEPLAEGIFESTVTITVTAK 66

Query: 71  VKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADAITRAGFPPVH 130
           + DKVAFLVEGKQAGIFE RN+P +QLDPLLGIGCPNI+YPYLRANIADAITRAGFPPVH
Sbjct: 67  IGDKVAFLVEGKQAGIFEARNIPQDQLDPLLGIGCPNIVYPYLRANIADAITRAGFPPVH 126

Query: 131 LAEINFEVFYQQRLQALAEQQGA 153
           LAEINFEVFYQQRLQALAEQQ A
Sbjct: 127 LAEINFEVFYQQRLQALAEQQNA 149


>ref|YP_001354909.1| preprotein translocase SecB subunit [Janthinobacterium sp.
           Marseille]
 sp|A6T312|SECB_JANMA RecName: Full=Protein-export protein secB
 gb|ABR88669.1| preprotein translocase SecB subunit [Janthinobacterium sp.
           Marseille]
          Length = 164

 Score =  241 bits (614), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 125/142 (88%), Positives = 137/142 (96%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFESTVTITVTAK 70
           QP+FQIQRVYLKDLSLEQPNSPAIFLEQE P+IEV+VDVGA+ LAEG+FESTVTITVTAK
Sbjct: 7   QPLFQIQRVYLKDLSLEQPNSPAIFLEQEQPTIEVAVDVGAQPLAEGIFESTVTITVTAK 66

Query: 71  VKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADAITRAGFPPVH 130
           + DK+AFLVEGKQAGIFEIRN+P EQLDPLLGIGCPN+IYPYLRANIADAITRAGFPPVH
Sbjct: 67  IADKIAFLVEGKQAGIFEIRNIPDEQLDPLLGIGCPNVIYPYLRANIADAITRAGFPPVH 126

Query: 131 LAEINFEVFYQQRLQALAEQQG 152
           L+EINFEVFYQQRL+ALA+QQ 
Sbjct: 127 LSEINFEVFYQQRLEALAQQQA 148


>ref|YP_004754706.1| protein export cytoplasm chaperone protein [Collimonas fungivorans
           Ter331]
 gb|AEK63883.1| Protein export cytoplasm chaperone protein [Collimonas fungivorans
           Ter331]
          Length = 168

 Score =  240 bits (612), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 141/168 (83%), Positives = 159/168 (94%), Gaps = 4/168 (2%)

Query: 1   MSEQNQEAQQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFE 60
           M+E+NQ+A+QQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAP IEV+VDVGAEALAEG+FE
Sbjct: 1   MAEENQQAEQQPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPQIEVAVDVGAEALAEGIFE 60

Query: 61  STVTITVTAKVKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADA 120
           STVT+TVTAKVKDKVAFLVEGKQAGIFE+RN+P EQLDPLLGIGCPNI+YPYLRAN+ADA
Sbjct: 61  STVTVTVTAKVKDKVAFLVEGKQAGIFELRNIPTEQLDPLLGIGCPNIVYPYLRANLADA 120

Query: 121 ITRAGFPPVHLAEINFEVFYQQRLQALAEQQ----GATLVNNGSTAVN 164
           ITRAGFPP+HLAEINFEVFYQQRLQALAEQQ    G ++  +G++A+N
Sbjct: 121 ITRAGFPPIHLAEINFEVFYQQRLQALAEQQQKGSGDSIAVDGTSAIN 168


>ref|YP_001101203.1| preprotein translocase subunit SecB [Herminiimonas arsenicoxydans]
 sp|A4G995|SECB_HERAR RecName: Full=Protein-export protein secB
 emb|CAL63082.1| Protein export chaperone SecB [Herminiimonas arsenicoxydans]
          Length = 164

 Score =  233 bits (595), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 127/153 (83%), Positives = 138/153 (90%), Gaps = 4/153 (2%)

Query: 11  QPVFQIQRVYLKDLSLEQPNSPAIFLEQEAPSIEVSVDVGAEALAEGVFESTVTITVTAK 70
           QPVFQIQRVYLKDLSLEQPNSPAIFLEQ+AP IEV+VDVGAE LAEG+FESTVTITVTAK
Sbjct: 7   QPVFQIQRVYLKDLSLEQPNSPAIFLEQDAPVIEVAVDVGAEQLAEGLFESTVTITVTAK 66

Query: 71  VKDKVAFLVEGKQAGIFEIRNVPAEQLDPLLGIGCPNIIYPYLRANIADAITRAGFPPVH 130
           + DKVAFLVE KQAGIFE RN+P EQLDPL+GIGCP+ IYPYLRANIADAITRAGFPPVH
Sbjct: 67  INDKVAFLVEAKQAGIFEARNIPDEQLDPLIGIGCPSTIYPYLRANIADAITRAGFPPVH 126

Query: 131 LAEINFEVFYQQRLQALAEQQGATLVNNGSTAV 163
           L+EINFEVFYQQRL+ALA+Q  +    NGS  V
Sbjct: 127 LSEINFEVFYQQRLEALAQQHAS----NGSGIV 155