BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0378.p (249 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedi... 438 e-121 ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC... 401 e-110 ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC... 395 e-108 ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter3... 385 e-105 ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formige... 349 2e-94 >ref|YP_003773586.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] gb|ADJ61678.1| GTP-binding protein [Herbaspirillum seropedicae SmR1] Length = 246 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 214/219 (97%), Positives = 217/219 (99%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT Sbjct: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 Query: 61 QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+GGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR Sbjct: 61 QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQT+L Sbjct: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180 Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLDEANDKILELAGL 219 QSYVD GQPFPFTAQLFSALKRIGL+EANDKILELAGL Sbjct: 181 QSYVDEKGQPFPFTAQLFSALKRIGLEEANDKILELAGL 219 >ref|YP_001101365.1| ribosome biogenesis GTP-binding protein YsxC [Herminiimonas arsenicoxydans] sp|A4G9Q7|ENGB_HERAR RecName: Full=Probable GTP-binding protein EngB emb|CAL63244.1| Putative GTP-binding protein [Herminiimonas arsenicoxydans] Length = 239 Score = 401 bits (1030), Expect = e-110, Method: Composition-based stats. Identities = 192/223 (86%), Positives = 205/223 (91%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP T VPEIAFAGRSNAGKS+AIN+L NQK+L FASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPNTQVPEIAFAGRSNAGKSTAINILSNQKKLCFASKTPGRT 60 Query: 61 QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+GGAHVGQHR DE + +EIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYV++R Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVEEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVQRR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180 EQLAALV+IVDSRRPFTDLDIQM+EWFAPTGKPIHCIL+K+DKLNRNESTNALR A T L Sbjct: 121 EQLAALVLIVDSRRPFTDLDIQMLEWFAPTGKPIHCILTKSDKLNRNESTNALRTANTLL 180 Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLDEANDKILELAGLNQPV 223 SYVD GQPFPFTAQLFSALKR G+DEANDKILEL GLN V Sbjct: 181 ASYVDEYGQPFPFTAQLFSALKRTGIDEANDKILELLGLNDEV 223 >ref|YP_001355067.1| ribosome biogenesis GTP-binding protein YsxC [Janthinobacterium sp. Marseille] sp|A6T3H0|ENGB_JANMA RecName: Full=Probable GTP-binding protein EngB gb|ABR89835.1| GTP-binding protein EngB [Janthinobacterium sp. Marseille] Length = 235 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 190/233 (81%), Positives = 212/233 (90%), Gaps = 1/233 (0%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLPKT VPEIAFAGRSNAGKS+AIN+LCNQK+LAFASKTPGRT Sbjct: 1 MSLLWQARFFTTVNHLRDLPKTQVPEIAFAGRSNAGKSTAINILCNQKKLAFASKTPGRT 60 Query: 61 QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+GGAHVGQHR DE + DEIRA+LVDLPGYGYAEVSGSAK HWQ LLGDYV++R Sbjct: 61 QHINYFSIGGAHVGQHRKDETKVDEIRALLVDLPGYGYAEVSGSAKLHWQELLGDYVQRR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180 EQLAALV+IVDSRRPFT+LDIQM+EWFAPTGKPIHC+L+K+DKLNRN++ NALR A+T L Sbjct: 121 EQLAALVLIVDSRRPFTELDIQMLEWFAPTGKPIHCLLTKSDKLNRNDAANALRTARTIL 180 Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLDEANDKILELAGLNQPVETAEPVAPAA 233 SYVD +GQPFPFTAQ+FSALKR GLDEANDKI+EL GLN+ + E PAA Sbjct: 181 GSYVDENGQPFPFTAQMFSALKRSGLDEANDKIIELLGLNEAPQ-EESNGPAA 232 >ref|YP_004751096.1| putative GTPase [Collimonas fungivorans Ter331] gb|AEK60273.1| putative GTPase with nucleoside triP hydrolase domain, involved in coordination of cell cycle [Collimonas fungivorans Ter331] Length = 329 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 189/237 (79%), Positives = 208/237 (87%), Gaps = 1/237 (0%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS LWQARFFTTVNHLRDLP VPEIAFAGRSNAGKS+AIN+LCNQK+LAFASKTPGRT Sbjct: 91 MSLLWQARFFTTVNHLRDLPTLQVPEIAFAGRSNAGKSTAINLLCNQKKLAFASKTPGRT 150 Query: 61 QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHINYFS+GGAHV QHR DE + DEIRA+LVDLPGYGYAEVSGSAK HWQ LLGDYVR+R Sbjct: 151 QHINYFSIGGAHVAQHRKDETKIDEIRALLVDLPGYGYAEVSGSAKLHWQQLLGDYVRRR 210 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180 +QLAALV+IVDSRRPFT+LD+QM+EWFAPTGKPIHCILSK+DKLNRN++TNALRQA+TFL Sbjct: 211 QQLAALVLIVDSRRPFTELDVQMVEWFAPTGKPIHCILSKSDKLNRNDATNALRQARTFL 270 Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLDEANDKILELAGLNQPVETAEPVAPAALANE 237 SYVD + Q PFTAQLFSAL R GL+EAND+ILELAGL P A AA A E Sbjct: 271 ASYVDENNQQLPFTAQLFSALNRSGLEEANDRILELAGLTDAAGDM-PDATAAGAGE 326 >ref|ZP_04580024.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] gb|EEO30997.1| GTP-binding protein EngB [Oxalobacter formigenes OXCC13] Length = 231 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 161/227 (70%), Positives = 191/227 (84%) Query: 1 MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60 MS+LWQARF+ TVNHLRDLPK VPE+AF GRSNAGKSSAIN LCNQK LAFASKTPGRT Sbjct: 1 MSKLWQARFYKTVNHLRDLPKLDVPEVAFVGRSNAGKSSAINTLCNQKSLAFASKTPGRT 60 Query: 61 QHINYFSLGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120 QHIN+FS+GGAHVGQHR+D R EI LVDLPGYG+A+VSGSAK HWQ LL DY+ R Sbjct: 61 QHINFFSIGGAHVGQHRHDPVRESEIDMFLVDLPGYGFAQVSGSAKEHWQKLLSDYLIHR 120 Query: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTFL 180 +QL LV+++D+R PF LD+Q++EWFA TGKP+HC+L+KADKLNR+ESTNAL+Q T L Sbjct: 121 QQLTGLVLVMDARHPFQPLDVQLLEWFAVTGKPVHCLLTKADKLNRSESTNALKQVDTIL 180 Query: 181 QSYVDADGQPFPFTAQLFSALKRIGLDEANDKILELAGLNQPVETAE 227 +SYVD +G PFPFTAQLFS+ KRIG+ EA D IL+LAG N+P +T + Sbjct: 181 KSYVDEEGNPFPFTAQLFSSTKRIGIKEATDTILQLAGGNEPPDTPD 227