BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0375.p (153 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773583.1| cytoplasmic protein [Herbaspirillum seropedi... 275 2e-72 ref|YP_004029456.1| transposase [Burkholderia rhizoxinica HKI 45... 159 1e-37 ref|XP_002538427.1| conserved hypothetical protein [Ricinus comm... 154 3e-36 ref|YP_441550.1| carboxymuconolactone decarboxylase family prote... 151 3e-35 ref|ZP_02362221.1| carboxymuconolactone decarboxylase family pro... 151 4e-35 >ref|YP_003773583.1| cytoplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61675.1| cytoplasmic protein [Herbaspirillum seropedicae SmR1] Length = 153 Score = 275 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 143/153 (93%), Positives = 147/153 (96%) Query: 1 MSDFKQRLPHAKLAAPAFNALLKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCTDMHSH 60 MSDFKQRLPHAKLAAPAFNAL+KASEVVHQSGVDPKLLELVFLRVSQLNGCAFC DMHSH Sbjct: 1 MSDFKQRLPHAKLAAPAFNALIKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCVDMHSH 60 Query: 61 DLLQKGEDQQRLNTLAAWREIAFFTEAERAALNWAERFTHLHQPDAEKEDAAFALLQQHF 120 DLLQKGEDQQRLNTLAAWREI FFT+AERAALNWAERFTHLHQ DA+KEDAAF LQQHF Sbjct: 61 DLLQKGEDQQRLNTLAAWREIPFFTDAERAALNWAERFTHLHQQDADKEDAAFVQLQQHF 120 Query: 121 NDTEIANLTFAVAIINAWNRLGVAMRPQAPRRA 153 NDTEIANLTFAVAIINAWNRLGV+MRPQ PRRA Sbjct: 121 NDTEIANLTFAVAIINAWNRLGVSMRPQVPRRA 153 >ref|YP_004029456.1| transposase [Burkholderia rhizoxinica HKI 454] emb|CBW75312.1| Transposase [Burkholderia rhizoxinica HKI 454] Length = 154 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 82/146 (56%), Positives = 102/146 (69%), Gaps = 2/146 (1%) Query: 7 RLPHAKLAAPAFNALLKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCTDMHSHDLLQKG 66 RLP+ +L+ A+ AL + + +S + KL +LVFLRVSQ+NGCAFC DMHSHDLLQ+ Sbjct: 6 RLPYRELSKDAYLALASVNAALGRSTLGQKLCDLVFLRVSQINGCAFCVDMHSHDLLQQS 65 Query: 67 EDQQRLNTLAAWREIAFFTEAERAALNWAERFTHLHQPDAEKEDAAFALLQQHFNDTEIA 126 E+ QRL ++ WRE F E AALNWAER T L P DA F L+ HF+DTEIA Sbjct: 66 ENMQRLLSMPTWRETELFDARESAALNWAERLTTL--PGGHPADADFQALKAHFSDTEIA 123 Query: 127 NLTFAVAIINAWNRLGVAMRPQAPRR 152 +LTFA+A+INAWNRLGV M+ PRR Sbjct: 124 DLTFAIAVINAWNRLGVGMQLPVPRR 149 >ref|XP_002538427.1| conserved hypothetical protein [Ricinus communis] ref|ZP_08506476.1| hypothetical protein METUNv1_03563 [Methyloversatilis universalis FAM5] gb|EEF23955.1| conserved hypothetical protein [Ricinus communis] gb|EGK70175.1| hypothetical protein METUNv1_03563 [Methyloversatilis universalis FAM5] Length = 150 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 77/147 (52%), Positives = 101/147 (68%), Gaps = 2/147 (1%) Query: 7 RLPHAKLAAPAFNALLKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCTDMHSHDLLQKG 66 RLP+ +LAA A+ L S+++ +D LLELV+LRVSQ+NGCAFC DMH+ L G Sbjct: 5 RLPYFRLAADAYKTLYSLSDLLGHGKLDKTLLELVYLRVSQMNGCAFCLDMHATALRGLG 64 Query: 67 EDQQRLNTLAAWREIAFFTEAERAALNWAERFTHLHQPDAEKEDAAFALLQQHFNDTEIA 126 ED QRL+T+A WRE FF++AERAAL+WAE T + D DA F L++HF D +IA Sbjct: 65 EDSQRLDTVAGWRECGFFSDAERAALDWAETLTRIG--DGAPSDAQFDTLKRHFEDAQIA 122 Query: 127 NLTFAVAIINAWNRLGVAMRPQAPRRA 153 L+FA+A INAWNR+ ++M RRA Sbjct: 123 ELSFAIATINAWNRIAISMGQPVERRA 149 >ref|YP_441550.1| carboxymuconolactone decarboxylase family protein [Burkholderia thailandensis E264] gb|ABC39378.1| carboxymuconolactone decarboxylase family protein [Burkholderia thailandensis E264] Length = 283 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 79/144 (54%), Positives = 96/144 (66%), Gaps = 2/144 (1%) Query: 7 RLPHAKLAAPAFNALLKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCTDMHSHDLLQKG 66 RLP+ KLA FNALL SE V + +L++LVFLRVSQ+NGCA+C DMH DL++ G Sbjct: 139 RLPYPKLATKPFNALLHLSETVWSGSLGKRLVDLVFLRVSQINGCAYCIDMHWRDLVKLG 198 Query: 67 EDQQRLNTLAAWREIAFFTEAERAALNWAERFTHLHQPDAEKEDAAFALLQQHFNDTEIA 126 D++ LN +A WRE FF ERAAL WAE + P A+ D AFA LQ HF+DTEIA Sbjct: 199 VDERHLNAVAGWREAPFFDARERAALQWAESVARI--PHADPSDEAFAQLQAHFSDTEIA 256 Query: 127 NLTFAVAIINAWNRLGVAMRPQAP 150 L FA+A INAWN L V+ R P Sbjct: 257 ELGFAIATINAWNLLNVSFRNPIP 280 >ref|ZP_02362221.1| carboxymuconolactone decarboxylase family protein [Burkholderia oklahomensis C6786] Length = 150 Score = 151 bits (381), Expect = 4e-35, Method: Composition-based stats. Identities = 79/144 (54%), Positives = 97/144 (67%), Gaps = 2/144 (1%) Query: 7 RLPHAKLAAPAFNALLKASEVVHQSGVDPKLLELVFLRVSQLNGCAFCTDMHSHDLLQKG 66 RLP+ KLA+ +FNALL SE V +D +L++LVFLRVSQ+NGCA+C DMH DL++ G Sbjct: 6 RLPYPKLASKSFNALLHLSETVWSGSLDKRLVDLVFLRVSQINGCAYCIDMHWRDLVRLG 65 Query: 67 EDQQRLNTLAAWREIAFFTEAERAALNWAERFTHLHQPDAEKEDAAFALLQQHFNDTEIA 126 DQ+ LN +A WRE FF ER AL WAE + P + DAAFA LQ HF+D EIA Sbjct: 66 VDQRHLNAVAGWREAPFFDARERIALQWAESVARI--PHTDPSDAAFAELQTHFSDAEIA 123 Query: 127 NLTFAVAIINAWNRLGVAMRPQAP 150 L FA+A INAWN L V+ R P Sbjct: 124 ELGFAIATINAWNLLNVSFRNPIP 147