BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0374.p (453 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773582.1| branched-chain amino acid ABC transporter pe... 751 0.0 ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, a... 561 e-158 ref|YP_560960.1| branched chain amino acid ABC transporter perip... 538 e-151 ref|ZP_06840389.1| Extracellular ligand-binding receptor [Burkho... 537 e-150 ref|YP_001897524.1| branched-chain amino acid ABC transporter pe... 536 e-150 >ref|YP_003773582.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] gb|ADJ61674.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 404 Score = 751 bits (1938), Expect = 0.0, Method: Composition-based stats. Identities = 393/404 (97%), Positives = 398/404 (98%), Gaps = 1/404 (0%) Query: 51 MTAFIRRAALSA-ACALLGAATLPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 109 MT FIRRAALSA ACALLGAA LPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA Sbjct: 1 MTPFIRRAALSATACALLGAAILPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMA 60 Query: 110 IADAGGTINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 169 IADAGG INGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG Sbjct: 61 IADAGGAINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAG 120 Query: 170 EKKKVFISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 229 EKKKVFISVGAGTTRQTNEECNAYT+QYAYDTTALARGTGAAITRQGGKSWYFLTADYAF Sbjct: 121 EKKKVFISVGAGTTRQTNEECNAYTIQYAYDTTALARGTGAAITRQGGKSWYFLTADYAF 180 Query: 230 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 289 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI Sbjct: 181 GTSLEKDTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAI 240 Query: 290 KAANEFGVNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDGWYWDLNDESRAWANRYFMKM 349 KAANEFGVNKTMKLAGLLIFINDTHSLGL +TQGMYLTDGWYWDLND++RAWANRYFMKM Sbjct: 241 KAANEFGVNKTMKLAGLLIFINDTHSLGLSLTQGMYLTDGWYWDLNDQTRAWANRYFMKM 300 Query: 350 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKNRIKDFFTSNGVVRPDGRMVH 409 KKMPSMFQAGDASAVGQYLKAVKAVGSTDAD+VMDYLRKNRI DFFTSNGVVRPDGRMVH Sbjct: 301 KKMPSMFQAGDASAVGQYLKAVKAVGSTDADKVMDYLRKNRINDFFTSNGVVRPDGRMVH 360 Query: 410 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 453 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK Sbjct: 361 DMYLMEVKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 404 >ref|ZP_08272537.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33985.1| Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 409 Score = 561 bits (1446), Expect = e-158, Method: Composition-based stats. Identities = 285/395 (72%), Positives = 328/395 (83%), Gaps = 1/395 (0%) Query: 59 ALSAACALLGAATLPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGGTIN 118 A+SA CAL A + SAQ +GDT+KIGFITD+SG Y+D DGQGGVEAI+MAIAD GGT+N Sbjct: 16 AISAVCALAFAGS-ASAQISGDTVKIGFITDISGLYSDIDGQGGVEAIKMAIADFGGTLN 74 Query: 119 GKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVFISV 178 GKK+EL+ ADHQNKADIAA+KAREWFD+ GVDML+GG NS +LAM KVA EKKK FIS+ Sbjct: 75 GKKIELISADHQNKADIAASKAREWFDQQGVDMLIGGTNSGTNLAMSKVALEKKKPFISI 134 Query: 179 GAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEKDTS 238 GAGT R TNEEC YT+ YAYDT ALA+GTGAA+ +QGGKSW+FLTADYAFG SLE DT+ Sbjct: 135 GAGTARLTNEECTPYTLHYAYDTVALAKGTGAAVVKQGGKSWFFLTADYAFGASLENDTT 194 Query: 239 EVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEFGVN 298 VVK+NGG V G+ R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD +NAIKAANEFGVN Sbjct: 195 SVVKANGGTVSGSVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTVNAIKAANEFGVN 254 Query: 299 KTMKLAGLLIFINDTHSLGLQMTQGMYLTDGWYWDLNDESRAWANRYFMKMKKMPSMFQA 358 KTMKLAGLL+FIND HSL ++TQGMYLTD WYWD NDESR W+ RYF KMKKMPS QA Sbjct: 255 KTMKLAGLLMFINDVHSLTPKLTQGMYLTDSWYWDQNDESRKWSRRYFEKMKKMPSSLQA 314 Query: 359 GDASAVGQYLKAVKAVGSTDADQVMDYLRKNRIKDFFTSNGVVRPDGRMVHDMYLMEVKK 418 D SA YL AVKA GS D D+VM +RK +I D + NG++R DG M+HDMYLM+VK Sbjct: 315 ADYSATLTYLNAVKATGSDDTDKVMAQMRKTKINDMYAKNGMIRDDGSMIHDMYLMQVKS 374 Query: 419 PSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 453 P+ESK PWDYYK++QTIPGEQA+ TKAE+KCA WK Sbjct: 375 PTESKYPWDYYKVIQTIPGEQAFTTKAETKCASWK 409 >ref|YP_560960.1| branched chain amino acid ABC transporter periplasmic ligand-binding protein [Burkholderia xenovorans LB400] gb|ABE32908.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Burkholderia xenovorans LB400] Length = 404 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 274/398 (68%), Positives = 327/398 (82%), Gaps = 1/398 (0%) Query: 56 RRAALSAACALLGAATLPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGG 115 R A L A A A T+ SAQAA D++KIGFITDMSG YAD DGQGG+EAIRMA+AD GG Sbjct: 8 RLATLCFAVAAGAALTMGSAQAADDSVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGG 67 Query: 116 TINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVF 175 +NGK + +V+ADHQNKADIAA++AREWFDRDGVDML+GG NSA L+M VAGEKKKV+ Sbjct: 68 KVNGKPITVVYADHQNKADIAASRAREWFDRDGVDMLIGGTNSATGLSMNTVAGEKKKVY 127 Query: 176 ISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEK 235 IS+GAG TNE+C YTV YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG +LEK Sbjct: 128 ISIGAGADTLTNEQCTPYTVHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFGKALEK 187 Query: 236 DTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEF 295 +T++VVK+NGG V+GA R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IKAA EF Sbjct: 188 NTADVVKANGGQVLGAVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAKEF 247 Query: 296 GVNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDGWYWDLNDESRAWANRYFMKMKKMPSM 355 G+ KTMKLA LL+FI+D HSLGL+ TQG+ LTD WYW+ + +R WA RYF KMKKMPS Sbjct: 248 GITKTMKLAALLVFIDDIHSLGLETTQGLVLTDSWYWNKDATTRKWAERYFDKMKKMPSS 307 Query: 356 FQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKNRIKDFFTSNGVVRPDGRMVHDMYLME 415 QA D SA YL AVKAVGSTD+D+VM L+K +I DF+ + G +R DG M+HDMYLM+ Sbjct: 308 LQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHDMYLMQ 366 Query: 416 VKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 453 VK P+ES+ PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 367 VKTPAESREPWDYYKITATIPGEQAFTTKAETRCALWK 404 >ref|ZP_06840389.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] gb|EFG72109.1| Extracellular ligand-binding receptor [Burkholderia sp. Ch1-1] Length = 404 Score = 537 bits (1384), Expect = e-150, Method: Composition-based stats. Identities = 274/398 (68%), Positives = 326/398 (81%), Gaps = 1/398 (0%) Query: 56 RRAALSAACALLGAATLPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGG 115 R A L A A A T+ SAQAA D++KIGFITDMSG YAD DGQGG+EAIRMA+AD GG Sbjct: 8 RLATLCFAVAAGAALTMGSAQAADDSVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGG 67 Query: 116 TINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVF 175 +NGK + +V+ADHQNKADIAA++AREWFDRDGVDML+GG NSA L+M VAGEKKKV+ Sbjct: 68 KVNGKPITVVYADHQNKADIAASRAREWFDRDGVDMLIGGTNSATGLSMNTVAGEKKKVY 127 Query: 176 ISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEK 235 IS+GAG TNE+C YT+ YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG +LEK Sbjct: 128 ISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFGKALEK 187 Query: 236 DTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEF 295 +TS+VVK+NGG V+GA R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IKAA EF Sbjct: 188 NTSDVVKANGGQVLGAVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAKEF 247 Query: 296 GVNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDGWYWDLNDESRAWANRYFMKMKKMPSM 355 G+ KTMKLA LL+FI+D HSLGL+ TQG+ LTD WYW+ + +R WA RYF K KKMPS Sbjct: 248 GITKTMKLAALLVFIDDIHSLGLETTQGLVLTDSWYWNKDATTRKWAERYFDKTKKMPSS 307 Query: 356 FQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKNRIKDFFTSNGVVRPDGRMVHDMYLME 415 QA D SA YL AVKAVGSTD+D+VM L+K +I DF+ + G +R DG M+HDMYLM+ Sbjct: 308 LQAADYSATITYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHDMYLMQ 366 Query: 416 VKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 453 VK P+ESK PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 367 VKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK 404 >ref|YP_001897524.1| branched-chain amino acid ABC transporter peripasmic protein [Burkholderia phytofirmans PsJN] gb|ACD18300.1| Extracellular ligand-binding receptor [Burkholderia phytofirmans PsJN] Length = 404 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 272/398 (68%), Positives = 325/398 (81%), Gaps = 1/398 (0%) Query: 56 RRAALSAACALLGAATLPSAQAAGDTIKIGFITDMSGTYADFDGQGGVEAIRMAIADAGG 115 R A L A A A T+ SAQAA D +KIGFITDMSG YAD DGQGG+EAIRMA+AD GG Sbjct: 8 RLATLCFAVAAGAALTMGSAQAADDAVKIGFITDMSGLYADIDGQGGLEAIRMAVADFGG 67 Query: 116 TINGKKVELVFADHQNKADIAANKAREWFDRDGVDMLVGGVNSAASLAMGKVAGEKKKVF 175 +NGK + +V+ADHQNKADIAA++AREWFDRDGVD+L+GG NSA L+M VAGEKKKV+ Sbjct: 68 KVNGKPITVVYADHQNKADIAASRAREWFDRDGVDLLIGGTNSATGLSMNTVAGEKKKVY 127 Query: 176 ISVGAGTTRQTNEECNAYTVQYAYDTTALARGTGAAITRQGGKSWYFLTADYAFGTSLEK 235 IS+GAG TNE+C YT+ YAYDTTALA+GTG+A+T+QGGK+WYFLTADYAFG +LEK Sbjct: 128 ISIGAGADTLTNEQCTPYTIHYAYDTTALAKGTGSAVTKQGGKTWYFLTADYAFGKALEK 187 Query: 236 DTSEVVKSNGGNVVGATRVPLATSDFSSFLLQAQSSKAQILGLAVAGGDVINAIKAANEF 295 +TS+VVK+NGG V+G R PL+ SDFSSFLLQAQ+SKAQILGLA AGGD IN+IKAA EF Sbjct: 188 NTSDVVKANGGQVLGTVRHPLSASDFSSFLLQAQASKAQILGLANAGGDTINSIKAAKEF 247 Query: 296 GVNKTMKLAGLLIFINDTHSLGLQMTQGMYLTDGWYWDLNDESRAWANRYFMKMKKMPSM 355 G+ KTMKLA LL+FI+D HSLGL+ TQG+ LTD WYW+ + +R WA RYF KM+KMPS Sbjct: 248 GITKTMKLAALLMFIDDVHSLGLETTQGLVLTDSWYWNKDATTRKWAQRYFDKMRKMPSS 307 Query: 356 FQAGDASAVGQYLKAVKAVGSTDADQVMDYLRKNRIKDFFTSNGVVRPDGRMVHDMYLME 415 QA D SA YL AVKAVGSTD+D+VM L+K +I DF+ + G +R DG M+HDMYLM+ Sbjct: 308 LQAADYSATMTYLNAVKAVGSTDSDKVMAQLKKTKIDDFY-AKGYIRQDGSMIHDMYLMQ 366 Query: 416 VKKPSESKRPWDYYKLVQTIPGEQAYMTKAESKCALWK 453 VK P+ESK PWDYYK+ TIPGEQA+ TKAE++CALWK Sbjct: 367 VKTPAESKEPWDYYKITATIPGEQAFTTKAETRCALWK 404