BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0371.p (314 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773579.1| LysR family transcription regulator protein ... 519 e-145 ref|YP_004378053.1| LysR family transcription regulator protein ... 413 e-113 ref|NP_884341.1| putative regulatory protein [Bordetella paraper... 354 1e-95 gb|ADR60639.1| LysR family transcriptional regulator [Pseudomona... 334 9e-90 ref|YP_001267479.1| LysR family transcriptional regulator [Pseud... 333 2e-89 >ref|YP_003773579.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61671.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 314 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 299/314 (95%), Positives = 305/314 (97%) Query: 1 MHTTLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGAQ 60 MH TLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLG Q Sbjct: 1 MHNTLPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGVQ 60 Query: 61 LFTRTNRGLEATELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLT 120 LFTRTNRGLE TELGHCVIRYARLIQTDLTHLREEML+IMQGHGGRLAVGTIMGAVPLLT Sbjct: 61 LFTRTNRGLEPTELGHCVIRYARLIQTDLTHLREEMLAIMQGHGGRLAVGTIMGAVPLLT 120 Query: 121 DALTQLLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL 180 DALT+LLEAHP LSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL Sbjct: 121 DALTRLLEAHPALSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEEL 180 Query: 181 AVVASVQHPLAEASSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA 240 AVVASVQHPLA+A SLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA Sbjct: 181 AVVASVQHPLADAPSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSA 240 Query: 241 FTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLKLHTRSEPYQLVTRRGTLLSPVAR 300 FTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPL+LHTRSEPYQLVTRRGT+LSPVAR Sbjct: 241 FTTLSLLQKNPHFVALLSVDVAQFCTRFGMTRILPLRLHTRSEPYQLVTRRGTMLSPVAR 300 Query: 301 LFVDGFARAVAAPG 314 LF+D FAR VA G Sbjct: 301 LFLDDFARTVAPQG 314 >ref|YP_004378053.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] gb|AEB56301.1| LysR family transcription regulator protein [Pseudomonas mendocina NK-01] Length = 310 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 230/307 (74%), Positives = 264/307 (85%) Query: 5 LPSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTR 64 LPS++SI SRL RQLRLLIAL + GSL+KAAE V+++QPGA+KALQEIE+TLGA LF R Sbjct: 2 LPSVSSIFSRLRFRQLRLLIALGEQGSLIKAAELVSISQPGATKALQEIETTLGAPLFVR 61 Query: 65 TNRGLEATELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALT 124 TNRGLEA ELGHC IRYA+LIQTDLTHLREEML I+QGHGGRL+VG IMGAVP +TDALT Sbjct: 62 TNRGLEANELGHCAIRYAKLIQTDLTHLREEMLGILQGHGGRLSVGVIMGAVPFMTDALT 121 Query: 125 QLLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVA 184 +LLE HP LSVEIVEDTSARLL LLDQGRLDLAICRTSIS++P+ YD ++ +E LAVVA Sbjct: 122 RLLEEHPDLSVEIVEDTSARLLSLLDQGRLDLAICRTSISRQPEQYDCIDVRDETLAVVA 181 Query: 185 SVQHPLAEASSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTL 244 + HPLA + L+LADLADSRWVVYSANMPMRL+LEREF A LRFPLHL+ETTSAFTTL Sbjct: 182 NRDHPLAGRAQLELADLADSRWVVYSANMPMRLSLEREFQQAGLRFPLHLLETTSAFTTL 241 Query: 245 SLLQKNPHFVALLSVDVAQFCTRFGMTRILPLKLHTRSEPYQLVTRRGTLLSPVARLFVD 304 SLLQKNP VALLS DVA+FCT FGMT ILPL+L +RSEPYQL+TRRG LS ++RLF++ Sbjct: 242 SLLQKNPELVALLSTDVARFCTGFGMTCILPLQLKSRSEPYQLITRRGVSLSSISRLFIE 301 Query: 305 GFARAVA 311 A+ Sbjct: 302 QLTPALG 308 >ref|NP_884341.1| putative regulatory protein [Bordetella parapertussis 12822] ref|NP_888024.1| regulatory protein [Bordetella bronchiseptica RB50] emb|CAE31976.1| Putative regulatory protein [Bordetella bronchiseptica RB50] emb|CAE37383.1| Putative regulatory protein [Bordetella parapertussis] Length = 315 Score = 354 bits (908), Expect = 1e-95, Method: Composition-based stats. Identities = 186/297 (62%), Positives = 234/297 (78%) Query: 6 PSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRT 65 P L SI SRLH++ LRLL+A+ +HGSLL AA++VA++QPGASKALQEIE+T GA LF RT Sbjct: 3 PPLTSIVSRLHIKHLRLLLAIYEHGSLLGAAKEVAISQPGASKALQEIETTFGAALFVRT 62 Query: 66 NRGLEATELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALTQ 125 NRGLEA +LG CV+RYAR+I TDL HLR E+ +I +G GGR+AVG+IMGA+PLLTDA++ Sbjct: 63 NRGLEANDLGLCVVRYARMIYTDLGHLRNELDAIQKGDGGRVAVGSIMGAIPLLTDAVSD 122 Query: 126 LLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVAS 185 L++ HP +SVEIVEDTSA LL LLD GRLDLAICRT +++ P+LY++ + EEL V+AS Sbjct: 123 LMQTHPGMSVEIVEDTSAELLGLLDSGRLDLAICRTVVTKSPELYESELLQPEELRVIAS 182 Query: 186 VQHPLAEASSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLS 245 + PLA A L L DLA +W+VY ANMPMR+ LEREF+DA +RFP +L+ETTS F TL+ Sbjct: 183 IGSPLALADELTLQDLAHCKWIVYRANMPMRILLEREFYDAGIRFPTNLLETTSPFATLA 242 Query: 246 LLQKNPHFVALLSVDVAQFCTRFGMTRILPLKLHTRSEPYQLVTRRGTLLSPVARLF 302 LL++N FVAL S DVA F R G+ ILP + RSEPY+LV RRG+L+S ARL Sbjct: 243 LLRRNSSFVALASTDVASFFARNGLVSILPFQFTLRSEPYELVRRRGSLMSIGARLL 299 >gb|ADR60639.1| LysR family transcriptional regulator [Pseudomonas putida BIRD-1] Length = 313 Score = 334 bits (857), Expect = 9e-90, Method: Composition-based stats. Identities = 181/292 (61%), Positives = 220/292 (75%) Query: 6 PSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRT 65 PSL SI SRLH R LRLLI L +H SLL AA V LTQPGASKALQEIE+T G LF RT Sbjct: 3 PSLNSIMSRLHARHLRLLIELDEHRSLLGAASSVGLTQPGASKALQEIETTFGTVLFNRT 62 Query: 66 NRGLEATELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALTQ 125 NRGLE T GHC IRYARL+QTD+ +LR ++ +I++G GGRLAVG IMGAVPLL A++Q Sbjct: 63 NRGLEPTAAGHCAIRYARLLQTDIANLRHDLDAILRGVGGRLAVGAIMGAVPLLMKAVSQ 122 Query: 126 LLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVAS 185 L P +S EI+EDTS LL ++ GRLD+A+CRTS+S P L+ + + +E LAV+A+ Sbjct: 123 LASIQPQMSFEIIEDTSQSLLTQIESGRLDIALCRTSVSNTPQLFASTFVQDETLAVIAN 182 Query: 186 VQHPLAEASSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLS 245 + HPL A SL LADLA+SRW+VY ANMPMR+ LEREFHDA LRFPLHL+ETTS TLS Sbjct: 183 IDHPLKHAPSLSLADLAESRWIVYRANMPMRVQLEREFHDAGLRFPLHLVETTSILATLS 242 Query: 246 LLQKNPHFVALLSVDVAQFCTRFGMTRILPLKLHTRSEPYQLVTRRGTLLSP 297 LLQ P FVAL+S+DVAQ C ILPL + + S+PY+LVTR+G+ +P Sbjct: 243 LLQNRPDFVALVSIDVAQQCAMNQQVSILPLSMGSVSDPYELVTRKGSQATP 294 >ref|YP_001267479.1| LysR family transcriptional regulator [Pseudomonas putida F1] gb|ABQ78295.1| transcriptional regulator, LysR family [Pseudomonas putida F1] Length = 313 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 181/292 (61%), Positives = 220/292 (75%) Query: 6 PSLASITSRLHLRQLRLLIALSDHGSLLKAAEQVALTQPGASKALQEIESTLGAQLFTRT 65 PSL SI SRLH R LRLLI L +H SLL AA V LTQPGASKALQEIE+T G LF RT Sbjct: 3 PSLNSIMSRLHARHLRLLIELDEHRSLLGAASSVGLTQPGASKALQEIETTFGTVLFNRT 62 Query: 66 NRGLEATELGHCVIRYARLIQTDLTHLREEMLSIMQGHGGRLAVGTIMGAVPLLTDALTQ 125 NRGLE T GHC IRYARL+QTD+ +LR ++ +I++G GGRLAVG IMGAVPLL A++Q Sbjct: 63 NRGLEPTAAGHCAIRYARLLQTDIANLRHDLDAILRGVGGRLAVGAIMGAVPLLMKAVSQ 122 Query: 126 LLEAHPTLSVEIVEDTSARLLRLLDQGRLDLAICRTSISQRPDLYDAFNIHEEELAVVAS 185 L P +S EI+EDTS LL ++ GRLD+A+CRTS+S P L+ + + +E LAV+A+ Sbjct: 123 LASIQPQMSFEIIEDTSQSLLTQIESGRLDIALCRTSVSNTPQLFASTFVQDETLAVIAN 182 Query: 186 VQHPLAEASSLQLADLADSRWVVYSANMPMRLTLEREFHDADLRFPLHLMETTSAFTTLS 245 + HPL A SL LADLA+SRW+VY ANMPMR+ LEREFHDA LRFPLHL+ETTS TLS Sbjct: 183 IDHPLKHAPSLSLADLAESRWIVYRANMPMRVQLEREFHDAGLRFPLHLVETTSILATLS 242 Query: 246 LLQKNPHFVALLSVDVAQFCTRFGMTRILPLKLHTRSEPYQLVTRRGTLLSP 297 LLQ P FVAL+S+DVAQ C ILPL + + S+PY+LVTR+G+ +P Sbjct: 243 LLQNRPDFVALVSIDVAQQCAMNQQVSILPLSMASVSDPYELVTRKGSQATP 294