BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0370.p (286 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholde... 279 4e-73 ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bo... 142 6e-32 ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bo... 141 9e-32 ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ... 123 3e-26 ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ... 115 1e-23 >ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1] gb|ACR29418.1| Hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1] Length = 328 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 144/329 (43%), Positives = 191/329 (58%), Gaps = 44/329 (13%) Query: 1 MDINQTIAKLVQSEGGICVFDKIAFPLPYNTDAVACKFGLGAELFMSPADQPLLLHRALE 60 MD +Q + L+QS GG C D++ P A KFGLG ELF+ D+ L RAL+ Sbjct: 1 MDPDQVVGDLLQSHGGPCALDRLHLPYANPDSGPAAKFGLGCELFLPSIDRGTLGERALQ 60 Query: 61 FLVDYWKTFPDKVNRFLADETTRTVKFSGDPRGRIQADMDR-QPQYGYSAALMGMVDIGM 119 FL+DY + FP++V++FL + R VKFS D + R+ D + P++GYS AL G VDIG+ Sbjct: 61 FLLDYHQMFPEQVDKFLPRDARRAVKFSNDLKSRLDHDYHQGPPEHGYSTALFGAVDIGL 120 Query: 120 KIDNVNPYRSDVLVRRTEENNLSFVNAHFQICNDQSEPNFEVLLAATLRWCAICQPLHGS 179 D+V PY++ VL+ R +E +LSFV A+ +C PN+ +L A LRW A+C+P+HG+ Sbjct: 121 PKDDVAPYQAHVLISRADEKDLSFVKAYLPVCW-SDRPNYALLTEAVLRWSALCRPVHGT 179 Query: 180 AGFVFIFEN--DQESEYTQQLFKRFPGFDFQDTGSFSFEARDVRNRIKCVNWLF------ 231 AG I+ + Q ++Y + KRFPGFD+ FS EA V NRIKCV+WL Sbjct: 180 AGLTLIYASGMSQNTKYALPVMKRFPGFDYIYGVDFSMEAGAVHNRIKCVSWLTVLGDEI 239 Query: 232 ----------------------------------PQIGDTWRDEVPEAYRLVARYTKSIR 257 PQ+GD R ++PEAYR+VARYTK +R Sbjct: 240 VTELGGTDRMRAALEPTCKIHEYPGGVVIQAGENPQLGDATRGDIPEAYRMVARYTKPVR 299 Query: 258 FETYRSGLFRVPQGLDKKEETLAWIRRFD 286 FE Y S LFRVP LDKKEETL WIRRFD Sbjct: 300 FEAYSSRLFRVPDNLDKKEETLRWIRRFD 328 >ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419] emb|CCC30902.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419] Length = 327 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 92/304 (30%), Positives = 132/304 (43%), Gaps = 54/304 (17%) Query: 33 AVACKFGLGAELFMSPADQ---PLLLHRALEFLVDYWKTFPDKVNRFLADETTRTVKFSG 89 AV + LG ELF++P Q P + L L Y++ F +N +L + G Sbjct: 28 AVEARIALGVELFIAPPGQEKTPKMYQDMLTSLEAYYQHFKPHLNCYLLPNSRSNRMIKG 87 Query: 90 DP-----RGRIQADMDRQPQYGYSAALMGMVDIGMKIDNVNPYRSDVLVRRTEENNLSFV 144 +P + DMD YG++ L + N +P+R+ + EEN LS + Sbjct: 88 NPVPVWRKALENVDMD----YGFNFELFYDDTWKREAFNASPWRAGCMGLTPEENQLSNI 143 Query: 145 NAHFQICNDQSEPNFEVLLAATLRWCAICQPLHGSAGFVFIFEN--DQESEYTQQLFKRF 202 +CND+ + +F L A TL WC QP+HGSAGF + + ++ YT +RF Sbjct: 144 TGAMPVCNDEGDNHFATLFAMTLAWCERHQPVHGSAGFCYALCTGIEPQARYTWASMQRF 203 Query: 203 PGFDFQDTGSFSFEARDVRNRIKCVNWL-------------------------------- 230 PG DF D FS ++ NRIK VNWL Sbjct: 204 PGIDFFDPVIFSLRVKENYNRIKGVNWLTILGDTLVAELGGVETLTCALEPECRIHPYRG 263 Query: 231 --------FPQIGDTWRDEVPEAYRLVARYTKSIRFETYRSGLFRVPQGLDKKEETLAWI 282 PQ GD + P+ Y+ VA T+ +RF+ YR +P+ D E T+ WI Sbjct: 264 GIIIIAGPVPQTGDLYTGFTPQRYKKVAAVTRPVRFDNYRRPFLELPEQFDSMEATMKWI 323 Query: 283 RRFD 286 RRFD Sbjct: 324 RRFD 327 >ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419] emb|CCC30910.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419] Length = 327 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 136/301 (45%), Gaps = 48/301 (15%) Query: 33 AVACKFGLGAELFMSPADQ---PLLLHRALEFLVDYWKTFPDKVNRFLA--DETTRTVKF 87 AV + LG ELF++P + P + L L Y++ F +N +L + R +K Sbjct: 28 AVEARIALGVELFIAPPGEEKTPQMYQDMLTSLEAYYQHFKPHLNCYLLPNSRSNRMIKG 87 Query: 88 SGDPRGRIQADMDRQPQYGYSAALMGMVDIGMKIDNVNPYRSDVLVRRTEENNLSFVNAH 147 + P R +A + YG+S L + N +P+R L E ++LSF+ Sbjct: 88 NPVPVWR-KALENHDVDYGFSFELFYDDTWERQSFNASPWRVSFLGDIPERSDLSFIQGS 146 Query: 148 FQICNDQSEPNFEVLLAATLRWCAICQPLHGSAGFVFIFEN--DQESEYTQQLFKRFPGF 205 +CND+ E +F L A TL WC QP+HGSAGF + + ++ YT +RFPG Sbjct: 147 MPVCNDEGENHFSTLFAMTLAWCERHQPVHGSAGFCYALCTGIEPKARYTWASMQRFPGI 206 Query: 206 DFQDTGSFSFEARDVRNRIKCVNWL----------------------------------- 230 DF D +FS E + +RIK VNWL Sbjct: 207 DFFDPINFSLEVEENYHRIKGVNWLTILGDALVTELGGVEKLAHALAPECRLHPYRGGVI 266 Query: 231 -----FPQIGDTWRDEVPEAYRLVARYTKSIRFETYRSGLFRVPQGLDKKEETLAWIRRF 285 PQ GD + +P+ Y+ VA T+ +RF+ YR +P+ D E T+ WIRRF Sbjct: 267 IIAGPVPQTGDLYTGFIPQRYKKVAAVTRPVRFDNYRRPFLELPEQFDSMEATMKWIRRF 326 Query: 286 D 286 D Sbjct: 327 D 327 >ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT05137.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 139 Score = 123 bits (309), Expect = 3e-26, Method: Composition-based stats. Identities = 64/137 (46%), Positives = 73/137 (53%), Gaps = 40/137 (29%) Query: 190 QESEYTQQLFKRFPGFDFQDTGSFSFEARDVRNRIKCVNWL------------------- 230 Q ++Y L KRFPGFDF D F+ EA NRIKCVNWL Sbjct: 3 QNTKYALPLMKRFPGFDFIDGVDFTMEAEATHNRIKCVNWLTVLGDEIVAELGGDGPMRA 62 Query: 231 ---------------------FPQIGDTWRDEVPEAYRLVARYTKSIRFETYRSGLFRVP 269 +PQ+GD R ++PEAYR+VARYTK +RFE Y S LFRVP Sbjct: 63 ALEPTCKIHEYPGGVVIQAGEYPQLGDATRGDIPEAYRMVARYTKPVRFEAYSSRLFRVP 122 Query: 270 QGLDKKEETLAWIRRFD 286 LDKKEETL WIRRFD Sbjct: 123 DNLDKKEETLRWIRRFD 139 >ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT42131.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 139 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 62/137 (45%), Positives = 71/137 (51%), Gaps = 40/137 (29%) Query: 190 QESEYTQQLFKRFPGFDFQDTGSFSFEARDVRNRIKCVNWLF------------------ 231 Q ++Y L KRFPGFD+ FS EA V +R KCVNWL Sbjct: 3 QNTKYALPLMKRFPGFDYIYGVDFSMEAGAVHDRFKCVNWLTVLGDEIVTELGGAGPMRA 62 Query: 232 ----------------------PQIGDTWRDEVPEAYRLVARYTKSIRFETYRSGLFRVP 269 PQ+GD R ++PEAYR VARYTK +RFE Y S LFRVP Sbjct: 63 ALEPTCKIHEYAGGVVIQAGENPQLGDATRGDIPEAYRKVARYTKPVRFEAYSSRLFRVP 122 Query: 270 QGLDKKEETLAWIRRFD 286 LDKKEETL+WIRRFD Sbjct: 123 DNLDKKEETLSWIRRFD 139