BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0369.p         (152 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholde...   143   9e-33
ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ...   112   3e-23
ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bo...   110   8e-23
ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bo...   108   2e-22
ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ...   102   2e-20

>ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1]
 gb|ACR29418.1| Hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1]
          Length = 328

 Score =  143 bits (360), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/118 (55%), Positives = 83/118 (70%), Gaps = 2/118 (1%)

Query: 19  PNFEVLLAATLRWCAICQPVHGSAGCAFVFEN--DQKSEYTQQLFKRFPGFDFQDGGWFA 76
           PN+ +L  A LRW A+C+PVHG+AG   ++ +   Q ++Y   + KRFPGFD+  G  F+
Sbjct: 157 PNYALLTEAVLRWSALCRPVHGTAGLTLIYASGMSQNTKYALPVMKRFPGFDYIYGVDFS 216

Query: 77  LEARDVHNRIKCVNWLTVLCDALVEELGGRDKMHTTLEPVCKAHDYPGGVVIQATLEP 134
           +EA  VHNRIKCV+WLTVL D +V ELGG D+M   LEP CK H+YPGGVVIQA   P
Sbjct: 217 MEAGAVHNRIKCVSWLTVLGDEIVTELGGTDRMRAALEPTCKIHEYPGGVVIQAGENP 274


>ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gb|EDT05137.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 139

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/83 (62%), Positives = 57/83 (68%)

Query: 52  QKSEYTQQLFKRFPGFDFQDGGWFALEARDVHNRIKCVNWLTVLCDALVEELGGRDKMHT 111
           Q ++Y   L KRFPGFDF DG  F +EA   HNRIKCVNWLTVL D +V ELGG   M  
Sbjct: 3   QNTKYALPLMKRFPGFDFIDGVDFTMEAEATHNRIKCVNWLTVLGDEIVAELGGDGPMRA 62

Query: 112 TLEPVCKAHDYPGGVVIQATLEP 134
            LEP CK H+YPGGVVIQA   P
Sbjct: 63  ALEPTCKIHEYPGGVVIQAGEYP 85


>ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419]
 emb|CCC30910.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419]
          Length = 327

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 64/136 (47%), Positives = 80/136 (58%), Gaps = 5/136 (3%)

Query: 14  NGQGTPNFEVLLAATLRWCAICQPVHGSAGCAFVFEN--DQKSEYTQQLFKRFPGFDFQD 71
           N +G  +F  L A TL WC   QPVHGSAG  +      + K+ YT    +RFPG DF D
Sbjct: 151 NDEGENHFSTLFAMTLAWCERHQPVHGSAGFCYALCTGIEPKARYTWASMQRFPGIDFFD 210

Query: 72  GGWFALEARDVHNRIKCVNWLTVLCDALVEELGGRDKMHTTLEPVCKAHDYPGGVVIQAT 131
              F+LE  + ++RIK VNWLT+L DALV ELGG +K+   L P C+ H Y GGV+I A 
Sbjct: 211 PINFSLEVEENYHRIKGVNWLTILGDALVTELGGVEKLAHALAPECRLHPYRGGVIIIAG 270

Query: 132 LEPVCKAHD-YPGGPP 146
             PV +  D Y G  P
Sbjct: 271 --PVPQTGDLYTGFIP 284


>ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419]
 emb|CCC30902.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419]
          Length = 327

 Score =  108 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/136 (44%), Positives = 79/136 (58%), Gaps = 5/136 (3%)

Query: 14  NGQGTPNFEVLLAATLRWCAICQPVHGSAGCAFVFEN--DQKSEYTQQLFKRFPGFDFQD 71
           N +G  +F  L A TL WC   QPVHGSAG  +      + ++ YT    +RFPG DF D
Sbjct: 151 NDEGDNHFATLFAMTLAWCERHQPVHGSAGFCYALCTGIEPQARYTWASMQRFPGIDFFD 210

Query: 72  GGWFALEARDVHNRIKCVNWLTVLCDALVEELGGRDKMHTTLEPVCKAHDYPGGVVIQAT 131
              F+L  ++ +NRIK VNWLT+L D LV ELGG + +   LEP C+ H Y GG++I A 
Sbjct: 211 PVIFSLRVKENYNRIKGVNWLTILGDTLVAELGGVETLTCALEPECRIHPYRGGIIIIAG 270

Query: 132 LEPVCKAHD-YPGGPP 146
             PV +  D Y G  P
Sbjct: 271 --PVPQTGDLYTGFTP 284


>ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT42131.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 139

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/83 (57%), Positives = 56/83 (67%)

Query: 52  QKSEYTQQLFKRFPGFDFQDGGWFALEARDVHNRIKCVNWLTVLCDALVEELGGRDKMHT 111
           Q ++Y   L KRFPGFD+  G  F++EA  VH+R KCVNWLTVL D +V ELGG   M  
Sbjct: 3   QNTKYALPLMKRFPGFDYIYGVDFSMEAGAVHDRFKCVNWLTVLGDEIVTELGGAGPMRA 62

Query: 112 TLEPVCKAHDYPGGVVIQATLEP 134
            LEP CK H+Y GGVVIQA   P
Sbjct: 63  ALEPTCKIHEYAGGVVIQAGENP 85