BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0367.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholde...   155   3e-36
ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ...   126   2e-27
ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bo...   125   4e-27
ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bo...   124   1e-26
ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ...   112   3e-23

>ref|YP_002912122.1| hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1]
 gb|ACR29418.1| Hypothetical protein bglu_1g23290 [Burkholderia glumae BGR1]
          Length = 328

 Score =  155 bits (392), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/143 (51%), Positives = 94/143 (65%), Gaps = 2/143 (1%)

Query: 42  PNFEVLLAATLRWCAICQPVHGSAGCAFIFEN--DQKSEYTQQLFKRFPGFDFQDAGAFS 99
           PN+ +L  A LRW A+C+PVHG+AG   I+ +   Q ++Y   + KRFPGFD+     FS
Sbjct: 157 PNYALLTEAVLRWSALCRPVHGTAGLTLIYASGMSQNTKYALPVMKRFPGFDYIYGVDFS 216

Query: 100 FQARAIHNRIKCVNWLTVLCDALVEELGGRDKMRAALEPVCKVHGYPGGVVIQAGAYPRS 159
            +A A+HNRIKCV+WLTVL D +V ELGG D+MRAALEP CK+H YPGGVVIQAG  P+ 
Sbjct: 217 MEAGAVHNRIKCVSWLTVLGDEIVTELGGTDRMRAALEPTCKIHEYPGGVVIQAGENPQL 276

Query: 160 LSDTAKVCSASRRVWTTRKKPSR 182
              T      + R+     KP R
Sbjct: 277 GDATRGDIPEAYRMVARYTKPVR 299


>ref|ZP_02889288.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gb|EDT05137.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 139

 Score =  126 bits (317), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/108 (56%), Positives = 70/108 (64%)

Query: 75  QKSEYTQQLFKRFPGFDFQDAGAFSFQARAIHNRIKCVNWLTVLCDALVEELGGRDKMRA 134
           Q ++Y   L KRFPGFDF D   F+ +A A HNRIKCVNWLTVL D +V ELGG   MRA
Sbjct: 3   QNTKYALPLMKRFPGFDFIDGVDFTMEAEATHNRIKCVNWLTVLGDEIVAELGGDGPMRA 62

Query: 135 ALEPVCKVHGYPGGVVIQAGAYPRSLSDTAKVCSASRRVWTTRKKPSR 182
           ALEP CK+H YPGGVVIQAG YP+    T      + R+     KP R
Sbjct: 63  ALEPTCKIHEYPGGVVIQAGEYPQLGDATRGDIPEAYRMVARYTKPVR 110


>ref|YP_004730685.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419]
 emb|CCC30910.1| hypothetical protein SBG_1842 [Salmonella bongori NCTC 12419]
          Length = 327

 Score =  125 bits (314), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 62/126 (49%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 36  CNGQGEPNFEVLLAATLRWCAICQPVHGSAGCAFIFEN--DQKSEYTQQLFKRFPGFDFQ 93
           CN +GE +F  L A TL WC   QPVHGSAG  +      + K+ YT    +RFPG DF 
Sbjct: 150 CNDEGENHFSTLFAMTLAWCERHQPVHGSAGFCYALCTGIEPKARYTWASMQRFPGIDFF 209

Query: 94  DAGAFSFQARAIHNRIKCVNWLTVLCDALVEELGGRDKMRAALEPVCKVHGYPGGVVIQA 153
           D   FS +    ++RIK VNWLT+L DALV ELGG +K+  AL P C++H Y GGV+I A
Sbjct: 210 DPINFSLEVEENYHRIKGVNWLTILGDALVTELGGVEKLAHALAPECRLHPYRGGVIIIA 269

Query: 154 GAYPRS 159
           G  P++
Sbjct: 270 GPVPQT 275


>ref|YP_004730678.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419]
 emb|CCC30902.1| hypothetical protein SBG_1829 [Salmonella bongori NCTC 12419]
          Length = 327

 Score =  124 bits (310), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/126 (46%), Positives = 79/126 (62%), Gaps = 2/126 (1%)

Query: 36  CNGQGEPNFEVLLAATLRWCAICQPVHGSAGCAFIFEN--DQKSEYTQQLFKRFPGFDFQ 93
           CN +G+ +F  L A TL WC   QPVHGSAG  +      + ++ YT    +RFPG DF 
Sbjct: 150 CNDEGDNHFATLFAMTLAWCERHQPVHGSAGFCYALCTGIEPQARYTWASMQRFPGIDFF 209

Query: 94  DAGAFSFQARAIHNRIKCVNWLTVLCDALVEELGGRDKMRAALEPVCKVHGYPGGVVIQA 153
           D   FS + +  +NRIK VNWLT+L D LV ELGG + +  ALEP C++H Y GG++I A
Sbjct: 210 DPVIFSLRVKENYNRIKGVNWLTILGDTLVAELGGVETLTCALEPECRIHPYRGGIIIIA 269

Query: 154 GAYPRS 159
           G  P++
Sbjct: 270 GPVPQT 275


>ref|ZP_02906714.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT42131.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 139

 Score =  112 bits (279), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 59/110 (53%), Positives = 71/110 (64%), Gaps = 4/110 (3%)

Query: 75  QKSEYTQQLFKRFPGFDFQDAGAFSFQARAIHNRIKCVNWLTVLCDALVEELGGRDKMRA 134
           Q ++Y   L KRFPGFD+     FS +A A+H+R KCVNWLTVL D +V ELGG   MRA
Sbjct: 3   QNTKYALPLMKRFPGFDYIYGVDFSMEAGAVHDRFKCVNWLTVLGDEIVTELGGAGPMRA 62

Query: 135 ALEPVCKVHGYPGGVVIQAGAYPRSLSDTAK--VCSASRRVWTTRKKPSR 182
           ALEP CK+H Y GGVVIQAG  P+ L D  +  +  A R+V     KP R
Sbjct: 63  ALEPTCKIHEYAGGVVIQAGENPQ-LGDATRGDIPEAYRKV-ARYTKPVR 110