BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0363.p (507 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002912124.1| beta-ketoacyl synthase [Burkholderia glumae ... 297 4e-78 ref|ZP_02889290.1| hypothetical protein BamIOP4010DRAFT_1352 [Bu... 288 1e-75 ref|YP_004731536.1| hypothetical protein SBG_2722 [Salmonella bo... 213 6e-53 ref|YP_004134525.1| beta-ketoacyl synthase [Mesorhizobium ciceri... 88 3e-15 ref|NP_954222.1| 3-oxoacyl-ACP synthase [Geobacter sulfurreducen... 70 6e-10 >ref|YP_002912124.1| beta-ketoacyl synthase [Burkholderia glumae BGR1] gb|ACR29420.1| beta-ketoacyl synthase [Burkholderia glumae BGR1] Length = 374 Score = 297 bits (760), Expect = 4e-78, Method: Composition-based stats. Identities = 190/350 (54%), Positives = 229/350 (65%), Gaps = 2/350 (0%) Query: 1 MSNAVFILGASCVFPSGPSLPLADAALRSQLSLLQYHPQYLDSAGAAPRISCFPDAPSFD 60 M++ I+ ASC+FPSGP + LAD A+R+QL+ LQ HP Y+D AG R S FP +FD Sbjct: 1 MNHTPMIVSASCIFPSGPRIELADTAVRAQLAQLQRHPDYVDGAGEPVRCSFFPGDRAFD 60 Query: 61 AARWGWLARHALAQLTQSLTPQ-WPALQASPRLLWLVLPDAA-RPYMPSGLVAQVSAAVE 118 AARWG LA AL Q+ L + AL+ S R LW+VLP++A RP +PS LV V A+V+ Sbjct: 61 AARWGALACEALEQVMDDLDRRGHEALRDSVRWLWIVLPESALRPGLPSDLVETVKASVQ 120 Query: 119 HEQWPWQRTHLVCGGHAAGMAALVEARLALDAQPDALAVVLAVEAGLGREAMYWLDMQGL 178 W + GGHAAG+AA+ EA L P ALAVVL VEAGLG +A+ WLD + L Sbjct: 121 EVGKGWTEVLIRNGGHAAGVAAIQEAAARLAENPTALAVVLGVEAGLGHDALMWLDARSL 180 Query: 179 LHGASVPHHGQLRRNAYGRVPGEGAAAIALSASPQHASSSWGRLLGCATAIEPVTHASSQ 238 LHGA + G+ R +GRVPGEGAAA+ALS SW RLLG A EP TH S + Sbjct: 181 LHGAHRAYRGRFRVEPHGRVPGEGAAALALSGRFASGGKSWARLLGVGQAHEPHTHGSGK 240 Query: 239 PCTGQGLAQAARQAIEQAYQHGPARIGHLFADLNGEPYRADQFGFTALRLGRLLTPDWQR 298 C G GL+QA R A+ Q +IG + DLNGEPYRADQFGF ALRL L P W+R Sbjct: 241 VCIGAGLSQAVRVALGQGRAFSADQIGWISVDLNGEPYRADQFGFAALRLAEALAPGWRR 300 Query: 299 SVPALASGDLHCASAVAHVALAAYGQLRRPQANPTLVLASSDDTLRGAAL 348 VPALASGDL ASA+AHVALAAYG +RP+ LVL+SSDD LRGA L Sbjct: 301 VVPALASGDLASASAIAHVALAAYGMWKRPRQANHLVLSSSDDPLRGAVL 350 >ref|ZP_02889290.1| hypothetical protein BamIOP4010DRAFT_1352 [Burkholderia ambifaria IOP40-10] gb|EDT05139.1| hypothetical protein BamIOP4010DRAFT_1352 [Burkholderia ambifaria IOP40-10] Length = 374 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 188/350 (53%), Positives = 225/350 (64%), Gaps = 2/350 (0%) Query: 1 MSNAVFILGASCVFPSGPSLPLADAALRSQLSLLQYHPQYLDSAGAAPRISCFPDAPSFD 60 M+ I+ ASC+FPSGP + LAD A+R+QL+ Q HP Y+D AG R S FP FD Sbjct: 1 MNRTPVIVSASCIFPSGPRIELADTAVRAQLAQHQRHPDYVDGAGEPVRGSFFPVDRPFD 60 Query: 61 AARWGWLARHALAQLTQSLTPQ-WPALQASPRLLWLVLPDAA-RPYMPSGLVAQVSAAVE 118 +ARWG LA AL Q+ L + AL R LW+VLP++A RP +PS LV V A+V+ Sbjct: 61 SARWGALACEALEQVMGDLVRRGHEALHRGVRWLWIVLPESALRPGLPSDLVETVKASVQ 120 Query: 119 HEQWPWQRTHLVCGGHAAGMAALVEARLALDAQPDALAVVLAVEAGLGREAMYWLDMQGL 178 W + GGHAAG+ A+ EA L+ P ALAVVL VE+GLG +A+ WLD + L Sbjct: 121 EVAEGWTEVLIRKGGHAAGVTAIEEAAERLEEDPTALAVVLGVESGLGHDALMWLDARSL 180 Query: 179 LHGASVPHHGQLRRNAYGRVPGEGAAAIALSASPQHASSSWGRLLGCATAIEPVTHASSQ 238 LHGA + G+ R YGRVPGEGAAA+ALS W RLLG A EP TH S + Sbjct: 181 LHGAHRAYRGRFRVEPYGRVPGEGAAAVALSGRLASGGKCWARLLGVGHAHEPHTHDSRK 240 Query: 239 PCTGQGLAQAARQAIEQAYQHGPARIGHLFADLNGEPYRADQFGFTALRLGRLLTPDWQR 298 C G GL+QAAR A+ Q + +IG + DLNGEPYRADQFGFTALRL L P WQR Sbjct: 241 VCIGAGLSQAARAALGQGQEFSADQIGWISVDLNGEPYRADQFGFTALRLAEALAPGWQR 300 Query: 299 SVPALASGDLHCASAVAHVALAAYGQLRRPQANPTLVLASSDDTLRGAAL 348 PALASGDL ASAVAHVALAAYG +RP+ LVL+SSDD LRGA L Sbjct: 301 VAPALASGDLASASAVAHVALAAYGMSKRPRQANHLVLSSSDDPLRGAVL 350 >ref|YP_004731536.1| hypothetical protein SBG_2722 [Salmonella bongori NCTC 12419] emb|CCC31774.1| hypothetical protein SBG_2722 [Salmonella bongori NCTC 12419] Length = 351 Score = 213 bits (543), Expect = 6e-53, Method: Composition-based stats. Identities = 133/345 (38%), Positives = 193/345 (55%), Gaps = 14/345 (4%) Query: 7 ILGASCVFPSGPSLPLADAALRSQLSLLQYHPQYLDSAGAAPRISCFPDAP-SFDAARWG 65 I+ A+C FPSGP+LPLAD A R SL++ HP +D +G + FPD + R+ Sbjct: 4 IISAACTFPSGPTLPLADIAFRLHFSLMRKHPLCVDRSGYPIKACYFPDIIYATPEERFR 63 Query: 66 WLARHALAQLTQSLTPQWPALQA-SPRLLWLVLPDAARPYMPSGLVAQVSAAV-EHEQWP 123 LAR L +LT PAL+ +P +WL+LP +RP M G+ + + ++ W Sbjct: 64 QLARQVLTELTG----HQPALKTITPGRIWLLLPPLSRPAMSEGVATAIRETIAKYTGWY 119 Query: 124 WQRTHLVCGGHAAGMAALVEARLALDAQPDALAVVLAVEAGLGREAMYWLDMQGLLHGAS 183 ++ GG A A+ R Q + + +++AV++ L ++ WLD Q LLHG+ Sbjct: 120 HSEICVLHGGQAEIATAIETIR---QNQCNTIEILMAVDSWLPSSSLMWLDAQNLLHGSL 176 Query: 184 VPHHGQLRRNAYGRVPGEGAAAIALSASPQHASSSWGRLLGCATAIEPVTHASSQPCTGQ 243 G R N YGRVP EGAAA+A+ + S W + TA EP+T S C G+ Sbjct: 177 RYFRGDTRPNPYGRVPSEGAAALAIMSGVSDISP-WCFIRNSGTANEPITCQSDGVCLGK 235 Query: 244 GLAQAARQAIEQAYQHGPARIGHLFADLNGEPYRADQFGFTALRLGRLLTPDWQRSVPAL 303 GL QAA +A+E + G + ++ +D+NGEPYR+D+ GFT LRL L ++QR P L Sbjct: 236 GLTQAALKALETS---GTTSVKNVISDVNGEPYRSDELGFTLLRLNGSLYENYQRETPVL 292 Query: 304 ASGDLHCASAVAHVALAAYGQLRRPQANPTLVLASSDDTLRGAAL 348 ASGDL CAS + H+AL ++ + TL+L+SSDD RGA + Sbjct: 293 ASGDLGCASLLTHMALLSWQMRNSTRRADTLILSSSDDERRGAVV 337 >ref|YP_004134525.1| beta-ketoacyl synthase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV15351.1| Beta-ketoacyl synthase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 351 Score = 88.2 bits (217), Expect = 3e-15, Method: Composition-based stats. Identities = 102/365 (27%), Positives = 150/365 (41%), Gaps = 45/365 (12%) Query: 3 NAVFILGASCVFPSGPSLPLADAALRSQLSLLQYHPQYLDSAGAAPRIS---------CF 53 +A+ I+G P G + AA+R+ +S +Q HP +D G +++ Sbjct: 5 DAIVIVGIGARTPLGFDAASSAAAVRAGISAIQQHPTMVDRFGEQMKVTRDMGIDLHMRG 64 Query: 54 PD---APSFDAARWGWLARHALAQLTQSLTPQWPALQASPRLLWLVLPDAARPYMPSGLV 110 PD A +FD A Q+L P AL +P L +V RP Sbjct: 65 PDRAVAIAFDPA-------------VQALRPMLGALGNAPVSL-IVATGEPRPGQDGEFA 110 Query: 111 AQVSAAVE---HEQWPWQRTHLVCGGHAAGMAALVEARLALDAQPDALAVVLAVEAGLGR 167 QV A + + +Q + GGHA GM A+++A +L + V+ L Sbjct: 111 VQVHAQLRSGLSQYAVFQGGGSIAGGHAGGMIAMLQASKSLREGSVTFCLAGGVDTYLQT 170 Query: 168 EAMYWLDMQGLLHGASVPHHGQLRRNAYGRVPGEGAA---AIALSASPQHASSSWGRLLG 224 E + WLD LH N YG PGE A L + ++A +L+G Sbjct: 171 ETLVWLDENEQLHSEG---------NIYGFCPGEAAGFCLMTTLRTARKYAIPPRLQLIG 221 Query: 225 CATAIEPVTHASSQPCTGQGLAQAARQAIEQAYQHGPARIGHLFADLNGEPYRADQFGFT 284 A E + G+GL A R E+A RI D+NGE YRA+++GF Sbjct: 222 IEGAHEEKRIRTETVVLGEGLGAAFRNLFEKAVTDPVDRI---ICDMNGERYRANEYGFA 278 Query: 285 ALRLGRLLTPDWQRSVPALASGDLHCASAVAHVALAAYGQLRRPQANP-TLVLASSDDTL 343 +R PA GD+ AS V+L A + R Q P +L+ SS++ + Sbjct: 279 TIRNPGRFRDAADFETPADCWGDVGAASGPLFVSLVAEAEARNYQTGPLSLIWTSSENGV 338 Query: 344 RGAAL 348 R AAL Sbjct: 339 RAAAL 343 >ref|NP_954222.1| 3-oxoacyl-ACP synthase [Geobacter sulfurreducens PCA] gb|AAR36572.1| beta-ketoacyl synthase domain protein [Geobacter sulfurreducens PCA] gb|ADI85929.1| 3-oxoacyl-(acyl carrier protein) synthase-related protein [Geobacter sulfurreducens KN400] Length = 347 Score = 70.5 bits (171), Expect = 6e-10, Method: Composition-based stats. Identities = 70/218 (32%), Positives = 99/218 (45%), Gaps = 15/218 (6%) Query: 133 GHAAGMAALVEARLALDAQPDALAVVLAVEAGLGREAMYWLDMQGLLHGASV-PHHGQLR 191 G+A+ M +L +A +D+ PDA+ +V V++ L + W + L AS H G + Sbjct: 134 GNASMMCSLEQAGRLIDSNPDAVCIVGGVDSLLRTSTLNWFEKDCRLKSASYGRHQGLIA 193 Query: 192 RNAYG-RVPGEGAAAIALSASPQHASSSWGRLLGCATAIEPVTHASSQPCTGQGLAQAAR 250 A G V GE A A Q G + G A+EP ASS GL +A Sbjct: 194 GEAVGFMVIGEHAGA------KQADRPILGSIAGLGLAVEPAPRASSALGRNSGLTEACH 247 Query: 251 QAIEQAYQHGPARIGHLFADLNGEPYRADQFGFTALRLGRLLTPDWQRSV--PALASGDL 308 A+ + I +F+DLNGE RA ++G +R PD R + PA GD+ Sbjct: 248 AALSGVQKKA---IRAIFSDLNGENSRAREWGMAEMRC--FDKPDESRRLWTPANCYGDI 302 Query: 309 HCASAVAHVALAAYGQLRRPQANPTLVLASSDDTLRGA 346 AS VA ++A G +R +P LV S D GA Sbjct: 303 GAASGVALASIAMQGLVRGWLQSPILVTCSDDHGPCGA 340