BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0362.p (359 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002912125.1| hypothetical protein bglu_1g23320 [Burkholde... 384 e-104 ref|ZP_02906718.1| conserved hypothetical protein [Burkholderia ... 378 e-103 ref|ZP_02889291.1| conserved hypothetical protein [Burkholderia ... 333 2e-89 ref|YP_004731535.1| hypothetical protein SBG_2721 [Salmonella bo... 270 3e-70 ref|NP_954227.1| hypothetical protein GSU3186 [Geobacter sulfurr... 194 2e-47 >ref|YP_002912125.1| hypothetical protein bglu_1g23320 [Burkholderia glumae BGR1] gb|ACR29421.1| Hypothetical protein bglu_1g23320 [Burkholderia glumae BGR1] Length = 362 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 197/346 (56%), Positives = 239/346 (69%) Query: 1 MWALDNRTPFAADSGWIRDSDGAEVWIVAVKATYDILRDGDTRIASEQVPVHSGPVPHDD 60 MW +DN TPF AD W+RDSDGAEVW+VAVKATY IL DG+ R+A EQ P++ GPVP D Sbjct: 1 MWRVDNGTPFVADRTWVRDSDGAEVWVVAVKATYSILPDGNIRLAGEQRPLNHGPVPADG 60 Query: 61 LRSLRYDIDLGPSKPATDILLNGHAYAQGTQHVEELHVGFRVGSMKRLAKVSGDRYWRRG 120 L YD DLGP K ATDI+LNG A+A + V L GF++G+ A V GDRYW R Sbjct: 61 RAGLLYDTDLGPPKTATDIVLNGSAWAPNGEPVRRLRAGFQIGATAHFALVWGDRYWERK 120 Query: 121 MLLTSASKAVPFMRMPLVYERAFGGDAPDAEHGSANPLGRGITPDADGRVWLPNVELLTH 180 + SKAVPF+ MPL YE AFGGD P+ S NP+GRG PDADGRVWLPN+E +T Sbjct: 121 LWSWRPSKAVPFVSMPLAYEHAFGGDTPELPPASRNPVGRGYAPDADGRVWLPNIESVTK 180 Query: 181 PIHKPGDRPAPMSFGPLPCHWPERQQYAGTCDEAWLEQRYPLPPKDLDPRHWQLAPAAQQ 240 PI K D P FG LP HWP R Q+AGT D+ W R+PLPP+DLDPR WQ+AP QQ Sbjct: 181 PIRKRDDVPPTTGFGVLPAHWPARLQHAGTYDDTWRNTRHPLPPEDLDPRFWQIAPPEQQ 240 Query: 241 VDGHLRGGEEVVLVNLTPPGFAADGRLSFKLPKLTLAFQTYFTDGHSVTSRSKIHTVILE 300 + HL GGE V L+N+T PG+ GRL+F+LPK++L +T F DG V +R IHTVILE Sbjct: 241 TNRHLSGGETVTLLNVTRPGWVPGGRLNFRLPKVSLVCETRFYDGTRVHTRPVIHTVILE 300 Query: 301 PDHPRVSIVHHMALSCHEHINRLDKTRILQKRRPLDRPFSPVHADL 346 PD RV +V+HMAL CHE +N LD+T + KRRPLD+ + V D+ Sbjct: 301 PDELRVCVVYHMALPCHEKVNLLDQTCVTMKRRPLDKAWQAVFGDV 346 >ref|ZP_02906718.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT42135.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 362 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 192/346 (55%), Positives = 235/346 (67%) Query: 1 MWALDNRTPFAADSGWIRDSDGAEVWIVAVKATYDILRDGDTRIASEQVPVHSGPVPHDD 60 MW +DN TPF AD W+RD DGAEVW+VAVKATY IL DG+ +A EQ+P++ GPVP D Sbjct: 1 MWRVDNWTPFVADRTWVRDPDGAEVWVVAVKATYSILPDGNVELAGEQLPLNHGPVPADG 60 Query: 61 LRSLRYDIDLGPSKPATDILLNGHAYAQGTQHVEELHVGFRVGSMKRLAKVSGDRYWRRG 120 L YD DLGPSK ATD++LNG A+A + V L GF++G+ A V GDRYW R Sbjct: 61 RAGLLYDTDLGPSKLATDVVLNGSAWAPNGEPVRTLRAGFQIGATSHFATVHGDRYWERK 120 Query: 121 MLLTSASKAVPFMRMPLVYERAFGGDAPDAEHGSANPLGRGITPDADGRVWLPNVELLTH 180 + S+A F+ MPLVYERAFGGD P+ S NP+GRG PDA+ RVWLPN+E +T Sbjct: 121 LWSWRPSEAAAFVSMPLVYERAFGGDTPELPPASRNPVGRGYVPDAEARVWLPNLESVTQ 180 Query: 181 PIHKPGDRPAPMSFGPLPCHWPERQQYAGTCDEAWLEQRYPLPPKDLDPRHWQLAPAAQQ 240 PI D P FG LP HWP R Q+ GT D AW R+PLPP DLDPR WQ+AP QQ Sbjct: 181 PIRNRNDMPPTTGFGVLPAHWPARLQHGGTYDNAWRNTRHPLPPADLDPRFWQIAPPEQQ 240 Query: 241 VDGHLRGGEEVVLVNLTPPGFAADGRLSFKLPKLTLAFQTYFTDGHSVTSRSKIHTVILE 300 V L GGE V LVN+TPP FA GRL+F+LPK++L +T F DG SR IHTVILE Sbjct: 241 VSSRLSGGEAVTLVNVTPPQFATSGRLTFRLPKVSLVCETRFYDGTREHSRPVIHTVILE 300 Query: 301 PDHPRVSIVHHMALSCHEHINRLDKTRILQKRRPLDRPFSPVHADL 346 PD RV +V+HMAL CHE +N L++TR+ K+RPLD+ + + D+ Sbjct: 301 PDQLRVCVVYHMALPCHEKVNLLEQTRVTMKQRPLDKGWLGIFGDV 346 >ref|ZP_02889291.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT05140.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 336 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 172/320 (53%), Positives = 214/320 (66%) Query: 27 IVAVKATYDILRDGDTRIASEQVPVHSGPVPHDDLRSLRYDIDLGPSKPATDILLNGHAY 86 +VAVKATY IL DG+ +ASEQ+P++ GPVP L YD DLGP K ATDI+LNG A+ Sbjct: 1 MVAVKATYSILPDGNVELASEQLPLNHGPVPAGGRAGLLYDTDLGPPKLATDIVLNGSAW 60 Query: 87 AQGTQHVEELHVGFRVGSMKRLAKVSGDRYWRRGMLLTSASKAVPFMRMPLVYERAFGGD 146 A + V L GF++G+ A V GDRYW R + S+A F+ MPLVYERAFGGD Sbjct: 61 APNGEPVRTLRAGFQIGATSHFATVHGDRYWERKLWSWRPSEAAAFVSMPLVYERAFGGD 120 Query: 147 APDAEHGSANPLGRGITPDADGRVWLPNVELLTHPIHKPGDRPAPMSFGPLPCHWPERQQ 206 + S NP+GRG PD +GRVWLPN+E +T PI D P FG LP HWP R Q Sbjct: 121 MLELPPASRNPVGRGSVPDTEGRVWLPNIESVTQPIRNRNDMPPTTGFGVLPAHWPARLQ 180 Query: 207 YAGTCDEAWLEQRYPLPPKDLDPRHWQLAPAAQQVDGHLRGGEEVVLVNLTPPGFAADGR 266 + GT D+AW R+PLPP+DLDPR WQ+AP QQV+G L GGE V L+N+T P GR Sbjct: 181 HGGTYDDAWRNTRHPLPPEDLDPRFWQIAPLEQQVNGRLSGGETVTLLNVTRPDLVPGGR 240 Query: 267 LSFKLPKLTLAFQTYFTDGHSVTSRSKIHTVILEPDHPRVSIVHHMALSCHEHINRLDKT 326 L F+LPK++L +T F DG V +R IHTVILEPD RV +V+HMAL CHE +N L++T Sbjct: 241 LKFRLPKVSLVCETRFYDGTRVHTRPVIHTVILEPDDLRVCVVYHMALPCHEKVNLLEQT 300 Query: 327 RILQKRRPLDRPFSPVHADL 346 R+ KRRPLD+ + V D+ Sbjct: 301 RVTMKRRPLDKAWQAVFGDV 320 >ref|YP_004731535.1| hypothetical protein SBG_2721 [Salmonella bongori NCTC 12419] emb|CCC31773.1| hypothetical protein SBG_2721 [Salmonella bongori NCTC 12419] Length = 340 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 148/351 (42%), Positives = 209/351 (59%), Gaps = 14/351 (3%) Query: 1 MWALDNRTPFAADSGWIRDSDGAEVWIVAVKATYDILRDGDTRIASEQVPVHSGPVPHDD 60 MW + N+T +A + W+R G E+W VA+KAT+DI DG T+++S Q+P+++GPV + D Sbjct: 1 MWRIQNQTSYAVERSWVRGRLGEEIWTVALKATFDIRPDGTTQLSSSQLPINTGPVLNSD 60 Query: 61 LRSLRYDIDLGPSKPATDILLNGHAYAQGTQHVEELHVGFRVGSMKRLAKVSGDRYWRRG 120 +L YD D GP K ATDI+LNGHA+ + + VG R+G++ RLA++ GDR W Sbjct: 61 NETLLYDTDFGPEKMATDIILNGHAWTPDGKPAPTIPVGLRIGNVTRLARIYGDRIWDG- 119 Query: 121 MLLTSASKAVPFMRMPLVYERAFGGDAPDAEHGSANPLGRGI-TPDADGRVWLPNVELLT 179 + +PF ++PL Y R G + + NP G + T G LPN+E Sbjct: 120 ---KRYKEPLPFDKLPLHYTRMSQGKYLTSCKDNFNPFGVSVETCPEIGISVLPNIEF-- 174 Query: 180 HPIHKPGDRPAPMSFGPLPCHWPERQQYAGTCDEAWLEQRYPLPPKDLDPRHWQLAPAAQ 239 + PG FG LP +WP R Q+AGT DE W +++ PL P+DLD R+WQ P Sbjct: 175 YDDETPG-------FGALPRYWPGRLQFAGTYDERWQQEQAPLLPEDLDERYWQSTPPPL 227 Query: 240 QVDGHLRGGEEVVLVNLTPPGFAADGRLSFKLPKLTLAFQTYFTDGHSVTSRSKIHTVIL 299 G L+GGE V L NLTPPG+ DG L F+LP++ AF+T F DG + ++K+HT+IL Sbjct: 228 YAGGRLKGGETVYLGNLTPPGYGRDGLLVFELPRIVPAFRTQFYDGSVIRHQAKLHTIIL 287 Query: 300 EPDHPRVSIVHHMALSCHEHINRLDKTRILQKRRPLDRPFSPVHADLEWPA 350 E D PRVS+V H ALSCH +N+L+ T + +K+R R + EW A Sbjct: 288 ETDFPRVSLVWHTALSCHHQVNQLESTTVSEKKRLFIRTKTLPTQFPEWEA 338 >ref|NP_954227.1| hypothetical protein GSU3186 [Geobacter sulfurreducens PCA] gb|AAR36577.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] gb|ADI85935.1| protein of unknown function DUF2169 [Geobacter sulfurreducens KN400] Length = 335 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 132/339 (38%), Positives = 187/339 (55%), Gaps = 23/339 (6%) Query: 4 LDNRTPFAADSGWIRDSDGAEVWIVAVKATYDILRDGDTRIASEQVPVHSGPVPHDD--L 61 L N TPFAA ++ D GAE +V VK T+ I RDG +A EQVP+ P+ D Sbjct: 3 LLNSTPFAATPLFLSDRHGAETLLVIVKGTWRINRDGTLSVAEEQVPIRFEPLYSGDPAS 62 Query: 62 RSLRYDIDLGPSKPATDILLNGHAYAQGTQHVEELHVGFRVGSMKRLAKVSGDRYWRRGM 121 SL +D D+ KP TD +L GHA+A VE + V F VG +++ +V G+R W + + Sbjct: 63 SSLIHDTDIILEKPGTDCILLGHAWAPKVG-VESVDVTFAVGPVRKAVRVFGERIWMKCL 121 Query: 122 LLTSASKAVPFMRMPLVYERAFGG------DAPDAEHGSANPLGRGI-----TPDADGRV 170 + S S+A PF ++PLV+ERAFGG D + E NP+GRGI + DG + Sbjct: 122 GMVSMSRAAPFEKIPLVWERAFGGADTSWPDPKNHEFCLENPVGRGILAKRTKQEIDG-L 180 Query: 171 WLPNVELLTHPIHKPGDRPAPMSFGPLPCHWPERQQYAGTCDEAWLEQRYPLPPKDLDPR 230 LPN+E THPI K D P PM FGP+P HW R +YAGT D+ W + PL P+D+D R Sbjct: 181 RLPNLEDPTHPIRKTDDHPRPMGFGPIPPHWQPRAKYAGTYDDHWRKYVNPLLPEDMDSR 240 Query: 231 HWQLAPAAQQVDGHLRGGEEVVLVNLTPPGFAADGRLSFKLPKLTLAFQTYFTDGHSVTS 290 AP + HL G E+V++ N + +GRL F LP +A + G +V Sbjct: 241 FHSSAPPGLMSNRHLSGTEQVLVANAS-----RNGRLEFTLPG--IAPRVSVAIGATVHE 293 Query: 291 -RSKIHTVILEPDHPRVSIVHHMALSCHEHINRLDKTRI 328 + ++ T+I+EPD R+ +V + H ++ L + I Sbjct: 294 LKMQLDTLIVEPDEERLVLVWRGNHNVHGKLHSLKRVCI 332