BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0361.p         (84 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|ZP_02889292.1| conserved hypothetical protein [Burkholderia ...    89   2e-16
ref|ZP_02906719.1| conserved hypothetical protein [Burkholderia ...    89   3e-16
ref|YP_004731531.1| hypothetical protein SBG_2717 [Salmonella bo...    77   7e-13
ref|YP_001044989.1| hypothetical protein Rsph17029_3117 [Rhodoba...    62   4e-08
ref|YP_002520571.1| hypothetical protein RSKD131_3638 [Rhodobact...    61   5e-08

>ref|ZP_02889292.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
 gb|EDT05141.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10]
          Length = 83

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 54/84 (64%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 1  MEQELELLLSKSEADAATSVAPTCEPPAPMAEELVLEARRQITLRCGKSSITLYPNGKIA 60
          M  E+E LL   +  AA   +   EPPA + +ELV EA+++ITLRCGK+SITLYPNGKIA
Sbjct: 1  MNLEIECLLP-PDTSAADPESAAAEPPAAIEDELVFEAKQKITLRCGKASITLYPNGKIA 59

Query: 61 LRGEYILSDAEGLNRIVGGQVELN 84
          LRGEYI+SDA G+NRI GGQVELN
Sbjct: 60 LRGEYIVSDAAGVNRIAGGQVELN 83


>ref|ZP_02906719.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
 gb|EDT42136.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5]
          Length = 83

 Score = 89.0 bits (219), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 50/84 (59%), Positives = 62/84 (73%), Gaps = 1/84 (1%)

Query: 1  MEQELELLLSKSEADAATSVAPTCEPPAPMAEELVLEARRQITLRCGKSSITLYPNGKIA 60
          M  E+E LL    + AA   +   E P    +ELV EA+++ITLRCGK+SITLYPNGKIA
Sbjct: 1  MNHEIECLLPPGTS-AANPESAAAELPVATEDELVFEAKQKITLRCGKASITLYPNGKIA 59

Query: 61 LRGEYILSDAEGLNRIVGGQVELN 84
          LRGEYI+S+A G+NRI GGQ+ELN
Sbjct: 60 LRGEYIVSEAAGVNRIAGGQIELN 83


>ref|YP_004731531.1| hypothetical protein SBG_2717 [Salmonella bongori NCTC 12419]
 emb|CCC31769.1| hypothetical protein SBG_2717 [Salmonella bongori NCTC 12419]
          Length = 78

 Score = 77.4 bits (189), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/55 (63%), Positives = 48/55 (87%)

Query: 30 MAEELVLEARRQITLRCGKSSITLYPNGKIALRGEYILSDAEGLNRIVGGQVELN 84
          + +ELV  A+++ITL CGKS ITLYPNGK+ ++GEYILSDAEG+NR+ GG++E+N
Sbjct: 24 IPDELVFTAQQKITLSCGKSQITLYPNGKVVIKGEYILSDAEGVNRLSGGRIEVN 78


>ref|YP_001044989.1| hypothetical protein Rsph17029_3117 [Rhodobacter sphaeroides ATCC
           17029]
 gb|ABN78217.1| conserved hypothetical protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 132

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 34  LVLEARRQITLRCGKSSITLYPNGKIALRGEYILSDAEGLNRIVGGQVELN 84
           LVLE RR++ LRCG++SITL P+G++ +RG  ILS A G NRI G  V+LN
Sbjct: 82  LVLEGRREVVLRCGRASITLAPDGRVTIRGTEILSRASGANRIQGASVQLN 132


>ref|YP_002520571.1| hypothetical protein RSKD131_3638 [Rhodobacter sphaeroides KD131]
 gb|ACM03498.1| Hypothetical Protein RSKD131_3638 [Rhodobacter sphaeroides KD131]
          Length = 132

 Score = 61.2 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/51 (58%), Positives = 39/51 (76%)

Query: 34  LVLEARRQITLRCGKSSITLYPNGKIALRGEYILSDAEGLNRIVGGQVELN 84
           LVLE RR++ LRCG++SITL P+G++ +RG  ILS A G NRI G  V+LN
Sbjct: 82  LVLEGRREVVLRCGRASITLAPDGRVTIRGTEILSRASGANRIQGASVQLN 132