BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0360.p (430 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02889293.1| conserved hypothetical protein [Burkholderia ... 280 4e-73 ref|ZP_02906720.1| conserved hypothetical protein [Burkholderia ... 265 1e-68 ref|YP_002912126.1| hypothetical protein bglu_1g23330 [Burkholde... 242 1e-61 ref|ZP_01126742.1| hypothetical protein NB231_12149 [Nitrococcus... 105 2e-20 ref|YP_002942471.1| hypothetical protein Vapar_0542 [Variovorax ... 94 5e-17 >ref|ZP_02889293.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] gb|EDT05142.1| conserved hypothetical protein [Burkholderia ambifaria IOP40-10] Length = 429 Score = 280 bits (716), Expect = 4e-73, Method: Composition-based stats. Identities = 190/422 (45%), Positives = 242/422 (57%), Gaps = 4/422 (0%) Query: 11 PDLLATTAEKLTDRHTDQLAFGWRRRPDRLANPALDFADLAAYDDRMQASLTALVHLGEP 70 P L+A+TAE L DR+ D LA GWRRR LA+ A+DF+DLA +DD++ A+L +L+ LG+P Sbjct: 3 PPLIASTAETLADRYADLLAMGWRRRTTMLASSAVDFSDLAEFDDQLLAALESLLLLGKP 62 Query: 71 ARQHFHNLLEEPVRSAELFAVTCYVLATQDAELFSAASALTTAIADLMPAKVAALQWAPD 130 A +PVR+ E+FA+T Y LA+ + E+ A AL TAI DL V A +WAP Sbjct: 63 ATLRMQVSTPDPVRAGEMFAMTLYALASDNHEMLDACQALATAIHDLRVGMVDAFEWAPA 122 Query: 131 SVLRISAIDSLSVVQQLRLVGLGYRQWPDLDERVLACLRA-QQSDAESVSAAFQLIRNLG 189 + + +++L +L LVG+ +R +P + ++ L L+ Q+ A ++ A QL++ +G Sbjct: 123 TPRVRARVEALPSSIRLPLVGVRHRDFPGVAQQALEQLQTIQEPTAAEIADALQLVQGVG 182 Query: 190 RTDWAHTGLRHLDDDHPAVRLAAAQTLLMLGSPDHHGPACATLQPLAVSEQDATA--TAA 247 R D A R+LD P VR AAQTLL L DH AC T L T A Sbjct: 183 RHDLASAARRYLDHALPDVRFTAAQTLLALAPADHTPSACDTFDQLLSDSAVDTGGFRTA 242 Query: 248 LRALALHAPAYTEPVLARLAAMPQHRRRYLLALGWMGRADAVPGLMAALEDRHHGRVAAA 307 LR+L LHAP L RLA + R YL+ALGW+GR AVP LM L + RVAAA Sbjct: 243 LRSLTLHAPDRAARHLERLAQSGE-IRLYLIALGWLGRISAVPVLMEHLAEPQTARVAAA 301 Query: 308 SLALITGSDPGRDGWSGPKPGRRQRPPEPGDQLSAHPDDHELPWPDPPAFAAWWRKHSER 367 SL+LITG+DP RD W GPK +++ D LPWPD AFAAWW H R Sbjct: 302 SLSLITGADPVRDDWQGPKMLLNGADEFADNEIPDVDPDAHLPWPDAAAFAAWWHVHGPR 361 Query: 368 FAADQRYFAGGPLTPAWLATVLRIGPLPWRPLAAEHRQRLLHAPLFATDLPADVQRQRLH 427 F YFAG P+TP WL VL GPL WRPLAAEH QRL P F T L A QR Sbjct: 362 FGNANGYFAGRPITPEWLGEVLISGPLAWRPLAAEHLQRLTRGPRFPTRLSAPAQRALFQ 421 Query: 428 EL 429 L Sbjct: 422 TL 423 >ref|ZP_02906720.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] gb|EDT42137.1| conserved hypothetical protein [Burkholderia ambifaria MEX-5] Length = 429 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 190/422 (45%), Positives = 242/422 (57%), Gaps = 4/422 (0%) Query: 11 PDLLATTAEKLTDRHTDQLAFGWRRRPDRLANPALDFADLAAYDDRMQASLTALVHLGEP 70 P L+ +TAE+L DR+ D LA GWRRR + LA+ A+DF+DLA +DDR+ A+L +L+ LGEP Sbjct: 3 PSLIESTAEQLADRYADLLAMGWRRRTNMLASSAVDFSDLAEFDDRLLAALESLLLLGEP 62 Query: 71 ARQHFHNLLEEPVRSAELFAVTCYVLATQDAELFSAASALTTAIADLMPAKVAALQWAPD 130 A +PVR+ E+FA+T Y LA+ + E+ A AL TAI DL V A +WAP Sbjct: 63 ATLRMQVSTPDPVRAGEMFAMTLYALASDNHEMLDACQALATAIPDLRVGMVDAFEWAPA 122 Query: 131 SVLRISAIDSLSVVQQLRLVGLGYRQWPDLDERVLACLRA-QQSDAESVSAAFQLIRNLG 189 + + I++L +L LVGL +R + + ++ L L+ Q+ A + A QL++ +G Sbjct: 123 TPRIRARIEALPSSIRLPLVGLRHRDFAGVAQQALERLQTIQEPTAAEIVDALQLVQGIG 182 Query: 190 RTDWAHTGLRHLDDDHPAVRLAAAQTLLMLGSPDHHGPACATL-QPLAVSEQDATA-TAA 247 R D A R+LD P VR AAAQTLL L D+ AC TL Q L+ S D A Sbjct: 183 RHDLATAARRYLDHAVPDVRCAAAQTLLALAPADYTPAACDTLDQLLSESAVDTGGFRTA 242 Query: 248 LRALALHAPAYTEPVLARLAAMPQHRRRYLLALGWMGRADAVPGLMAALEDRHHGRVAAA 307 LR+L LHAP L L + R YL+ALGW+GR AVP L+ L + RVAAA Sbjct: 243 LRSLTLHAPDRAARHLETLGQSGE-IRLYLIALGWLGRIGAVPVLIEHLAEPQTARVAAA 301 Query: 308 SLALITGSDPGRDGWSGPKPGRRQRPPEPGDQLSAHPDDHELPWPDPPAFAAWWRKHSER 367 SL+LITG+DP RD W GPK ++ D PWPD FAAWW H R Sbjct: 302 SLSLITGADPVRDDWQGPKMALNGPDELADSEIPVVDPDAHFPWPDAAGFAAWWHVHGPR 361 Query: 368 FAADQRYFAGGPLTPAWLATVLRIGPLPWRPLAAEHRQRLLHAPLFATDLPADVQRQRLH 427 F RYFAG P+TP WL VL GPL WRPL+AEH QRL P F T L A QR Sbjct: 362 FDNANRYFAGRPITPEWLGEVLISGPLAWRPLSAEHLQRLTRGPRFPTRLSAPAQRALFQ 421 Query: 428 EL 429 L Sbjct: 422 TL 423 >ref|YP_002912126.1| hypothetical protein bglu_1g23330 [Burkholderia glumae BGR1] gb|ACR29422.1| Hypothetical protein bglu_1g23330 [Burkholderia glumae BGR1] Length = 429 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 186/425 (43%), Positives = 240/425 (56%), Gaps = 14/425 (3%) Query: 13 LLATTAEKLTDRHTDQLAFGWRRRPDRLANPALDFADLAAYDDRMQASLTALVHLGEPAR 72 L+A+TAE+L D++ D LA GWRRR + L + A+DFADL +DDR+ A+L +L+ LGEP+ Sbjct: 5 LIASTAERLADQYADLLAIGWRRRTNMLVSSAVDFADLEEFDDRLLAALESLLLLGEPST 64 Query: 73 QHFHNLLEEPVRSAELFAVTCYVLATQDAELFSAASALTTAIADLMPAKVAALQWAPDSV 132 + +P+R+ E+FA+T Y LA D + AL TAI +L A +WAP + Sbjct: 65 RRMQVSTPDPLRAGEMFAMTLYALARDDNAMLDGCQALATAIPELRVGIADAFEWAPATP 124 Query: 133 LRISAIDSLSVVQQLRLVGLGYRQWPDL-DERVLACLRAQQSDAESVSAAFQLIRNLGRT 191 + I++L +L L+G+ +R + + + + Q+ A + A QL+R +GR Sbjct: 125 QLRARIEALPSSIRLPLIGVRHRDFDGVAQQALQQLQIIQEPTAAEIIDALQLVRGVGRH 184 Query: 192 DWAHTGLRHLDDDHPAVRLAAAQTLLMLGSPDHHGPACATLQPLAVSEQDATA--TAALR 249 D A R+L+ D VRLAAAQTLL L AC L L T +ALR Sbjct: 185 DLATDAQRYLEHDVAEVRLAAAQTLLSLAPGGREPAACDALDKLLSDSAPDTRVFVSALR 244 Query: 250 ALALHAPAYTEPVLARLAAMPQHRRRYLLALGWMGRADAVPGLMAALEDRHHGRVAAASL 309 +LALHAP RL P R +L+ALGW+GR DAVP LMA L RVAAAS+ Sbjct: 245 SLALHAPDRAPRYFDRLDE-PGLVRLHLMALGWLGRIDAVPALMAHLAAPRTARVAAASI 303 Query: 310 ALITGSDPGRDGWSGPKPGRRQRPPEPGDQLSAH--PD---DHELPWPDPPAFAAWWRKH 364 +LITG+DP RD W GP Q P+ D+L+ PD D LPWPD AFAAWW H Sbjct: 304 SLITGADPVRDDWQGP-----QMLPDATDRLAGGDIPDVDADAHLPWPDAAAFAAWWHAH 358 Query: 365 SERFAADQRYFAGGPLTPAWLATVLRIGPLPWRPLAAEHRQRLLHAPLFATDLPADVQRQ 424 RF QRYFAG ++P WL VL GPL WR LAAEH QRL PLF T L A QR Sbjct: 359 GPRFDGTQRYFAGRLISPEWLGEVLICGPLAWRALAAEHLQRLTRGPLFPTRLSAPAQRA 418 Query: 425 RLHEL 429 L Sbjct: 419 LFQTL 423 >ref|ZP_01126742.1| hypothetical protein NB231_12149 [Nitrococcus mobilis Nb-231] gb|EAR22488.1| hypothetical protein NB231_12149 [Nitrococcus mobilis Nb-231] Length = 416 Score = 105 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 119/417 (28%), Positives = 167/417 (40%), Gaps = 21/417 (5%) Query: 21 LTDRHTDQLAFGWRRRPDRLANPALDFADLAAYDDRMQASLTALVHLGEPARQHFHNLL- 79 + ++H ++ AF W R + P +LA+ D+R++A L GE + L Sbjct: 9 IVEQHGEEAAFLWLLRDAAVGAPHYSLVELASLDNRIEAHFDGLRIAGEAGWKTCAAALA 68 Query: 80 -EEPVRSAELFAVTCYVLATQDAELFSAASALTTAIADLMPAKVAALQWAPDSVLRISAI 138 EEP E+F L D + + + VAA W + R Sbjct: 69 QEEP---GEVFCAAVLALEGGDRDKIQSVYNTVELAPETSRGLVAAFGWVNRAWWRGEVR 125 Query: 139 DSLSVVQ-QLRLVGLGYRQWPDLDERVLACLRAQQSDAESVSAAFQLIRNLGRTDWAHTG 197 D L + R +GL +D + Q D E + A ++ LGR D+ Sbjct: 126 DLLHSDELHWRRIGLAAAATHRVDPGAVLIESLQVQDVELRAMALRVAGVLGRVDFLPAI 185 Query: 198 LRHLDDDHPAVRLAAAQTLLMLG----SPDHHGPACATLQPLAVSEQDATATAALRALAL 253 + P VR AA + +LG +P QP D ALRAL L Sbjct: 186 AAQVQSTDPEVRFQAACSAALLGDRGAAPREALTFVGMQQPRLA---DRALKVALRALPL 242 Query: 254 HAPAYTEPVLARLAAMPQHRRRYLLALGWMGRADAVPGLMAALEDRHHGRVAAASLALIT 313 +A P + +L P+ R +LA G +G VP L+ + RVA S A+IT Sbjct: 243 NAAL---PWVNQLVRQPEDLRHAVLACGIIGEPGCVPWLLEQMSVPELARVAGESFAMIT 299 Query: 314 GSDPGRDGWSGPKP-GRRQRPPEPGDQLSAHPD-DHELPWPDPPAFAAWWRKHSERFAAD 371 G D + G P G P E + + D D +LPWP+P A WW + F + Sbjct: 300 GVDLAYEDLEGEWPKGFEGGPTEDAEDENVTLDADEDLPWPEPRLIADWWSRSHGSFRSG 359 Query: 372 QRYFAGGPLTPAWLATVLRIGPLPWRPLAAEHRQRLLHA--PLFATDLPADVQRQRL 426 QRY G P+ L VLR G R AA +LLH PLF T P Q+Q L Sbjct: 360 QRYLVGKPIGVEHLEWVLRYGMQRQRE-AAALELKLLHPAEPLFETRAPGFRQQQML 415 >ref|YP_002942471.1| hypothetical protein Vapar_0542 [Variovorax paradoxus S110] gb|ACS17205.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 420 Score = 94.0 bits (232), Expect = 5e-17, Method: Composition-based stats. Identities = 119/418 (28%), Positives = 167/418 (39%), Gaps = 20/418 (4%) Query: 21 LTDRHTDQLAFGWRRRPDRLANPALDFADLAAYDDRMQASLTALVHLGEPARQHFHNLLE 80 + +H D + R + P + L+ D+R+ ASL L G+ AR LE Sbjct: 12 VVQQHLDNASVLRSTRAVLVRAPHVQLHRLSRLDERLAASLDGLAIAGDFARGLCMAALE 71 Query: 81 EPVRSAELFAVTCYVLATQDAELFSAASALTTAIADLMPAKVAALQWAPDSVLR---ISA 137 P R A +FA + T+D L +L A+ + V+A W P LR + Sbjct: 72 TPGRGA-MFANAIGAIDTRDPALLERLLSLAEAVPEARVGLVSAFGWVPAPELRGITRAL 130 Query: 138 IDSLSVVQQLRLVGLGYRQWPDLDERVLACLRAQQSDAESVSAAFQLIRNLGRTDW---A 194 +DS + R +GL D + + L +D E + AF + LGR D Sbjct: 131 LDSPHAFR--RDIGLAACAMHHADPQTV--LETAMADEEHSAQAFVVAGKLGRIDLLPGC 186 Query: 195 HTGLRHLDDDHPAVRLAAAQTLLMLGSPDHHGPACATLQPLAVSEQDATATAALRALALH 254 GL H D H R +A+ L+LG D G A L A AA+ AL + Sbjct: 187 LGGLMHEDAQH---RFESARAALLLG--DRQG-ALRMLVAFTGEGGPCQAAAAMLALKVL 240 Query: 255 APAYTEPVLARLAAMPQHRRRYLLALGWMGRADAVPGLMAALEDRHHGRVAAASLALITG 314 +L +A R + +G G VP L+A + D R+A S + ITG Sbjct: 241 PAEQAHALLQSIARKEDSVRILIRGIGAAGDPHYVPWLIAQMGDLKLARLAGESFSTITG 300 Query: 315 SDPGRDGWSGPKPGRRQRPPE--PGDQLSAHPDDHELPWPDPPAFAAWWRKHSERFAADQ 372 D + P P P D+ A +D LPWPD AWW+ RF Sbjct: 301 LDLAAEDLELKPPENPVAGPNDNPDDEDVAMDEDEGLPWPDAEKIDAWWQADGHRFPHGI 360 Query: 373 RYFAGGPLTPAWLATVLRIGPLPWRPLAAEHRQRLLHA-PLFATDLPADVQRQRLHEL 429 R F G P+T VL+ G R AAEH + PLF PA Q+ L ++ Sbjct: 361 RCFVGEPVTQGHCLAVLKTGFQRQRIAAAEHLSLMAPGRPLFNAAAPAWRQQWLLSQM 418