BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0356.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773575.1| 50S ribosomal protein L17 [Herbaspirillum se...   228   2e-58
ref|YP_004751088.1| 50S ribosomal protein L17p [Collimonas fungi...   206   6e-52
ref|YP_001355074.1| large subunit ribosomal protein L17 [Janthin...   204   4e-51
ref|YP_001101370.1| 50S ribosomal protein L17 [Herminiimonas ars...   203   8e-51
ref|ZP_04577871.1| 50S ribosomal subunit protein L17 [Oxalobacte...   195   2e-48

>ref|YP_003773575.1| 50S ribosomal protein L17 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61667.1| 50S ribosomal subunit L17 protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
           MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL
Sbjct: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60

Query: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120
           ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE
Sbjct: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120

Query: 121 VTDAADAPTAE 131
           VTDAADAPTAE
Sbjct: 121 VTDAADAPTAE 131


>ref|YP_004751088.1| 50S ribosomal protein L17p [Collimonas fungivorans Ter331]
 gb|AEK60265.1| LSU ribosomal protein L17p [Collimonas fungivorans Ter331]
          Length = 131

 Score =  206 bits (525), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 115/131 (87%), Positives = 125/131 (95%)

Query: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
           MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRV+EPILTLGKTDTL
Sbjct: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDTL 60

Query: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120
           ANKRLAF RLRDRE+V KLF+ELGPRYA RNGGYLRILKMGFR GDNAPMA++EL+DRPE
Sbjct: 61  ANKRLAFARLRDREMVLKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAYIELMDRPE 120

Query: 121 VTDAADAPTAE 131
           ++D A+ PTA+
Sbjct: 121 ISDGAEVPTAD 131


>ref|YP_001355074.1| large subunit ribosomal protein L17 [Janthinobacterium sp.
           Marseille]
 sp|A6T3H7|RL17_JANMA RecName: Full=50S ribosomal protein L17
 gb|ABR89070.1| large subunit ribosomal protein L17 [Janthinobacterium sp.
           Marseille]
          Length = 131

 Score =  204 bits (519), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 115/131 (87%), Positives = 123/131 (93%)

Query: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
           MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRV+EPILTLGKTD+L
Sbjct: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDSL 60

Query: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120
           ANKRLAFNRLRDRE+V KLF+ELGPRYA RNGGYLRILKMGFR GDNAPMAFVELVDRP+
Sbjct: 61  ANKRLAFNRLRDREMVVKLFAELGPRYANRNGGYLRILKMGFRVGDNAPMAFVELVDRPD 120

Query: 121 VTDAADAPTAE 131
            T+A +  + E
Sbjct: 121 TTEAVEDNSGE 131


>ref|YP_001101370.1| 50S ribosomal protein L17 [Herminiimonas arsenicoxydans]
 sp|A4G9R2|RL17_HERAR RecName: Full=50S ribosomal protein L17
 emb|CAL63249.1| 50S ribosomal protein L17 [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  203 bits (516), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 114/131 (87%), Positives = 123/131 (93%)

Query: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
           MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRV+EPILTLGKTD+L
Sbjct: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVIEPILTLGKTDSL 60

Query: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120
           ANKRLAFNRLRDRE+V KLF+ELGPRYA RNGGYLRILKMGFR GDNAPMAF+EL+DRPE
Sbjct: 61  ANKRLAFNRLRDREMVVKLFAELGPRYANRNGGYLRILKMGFRAGDNAPMAFIELLDRPE 120

Query: 121 VTDAADAPTAE 131
            T+A +  + E
Sbjct: 121 TTEAVEDNSGE 131


>ref|ZP_04577871.1| 50S ribosomal subunit protein L17 [Oxalobacter formigenes HOxBLS]
 gb|EEO28833.1| 50S ribosomal subunit protein L17 [Oxalobacter formigenes HOxBLS]
          Length = 129

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/120 (92%), Positives = 117/120 (97%)

Query: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPILTLGKTDTL 60
           MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPI+TLGKTDT+
Sbjct: 1   MRHRHGLRKLNRTSSHRLAMLRNMTVSLLRHEAIKTTLPKAKELRRVVEPIITLGKTDTV 60

Query: 61  ANKRLAFNRLRDREIVGKLFSELGPRYAARNGGYLRILKMGFRQGDNAPMAFVELVDRPE 120
           ANKRLAFNRLRDREIV KLF+ELGPR+A RNGGYLRILKMGFR GDNAPMA+VEL+DRPE
Sbjct: 61  ANKRLAFNRLRDREIVVKLFNELGPRFANRNGGYLRILKMGFRAGDNAPMAYVELMDRPE 120