BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0355.p (325 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773574.1| DNA-directed RNA polymerase subunit alpha [H... 615 e-174 ref|YP_004751087.1| DNA-directed RNA polymerase subunit alpha [C... 592 e-167 ref|ZP_08274694.1| DNA-directed RNA polymerase alpha subunit [Ox... 591 e-167 ref|YP_001101371.1| DNA-directed RNA polymerase subunit alpha [H... 590 e-166 ref|YP_001355075.1| DNA-directed RNA polymerase subunit alpha [J... 588 e-166 >ref|YP_003773574.1| DNA-directed RNA polymerase subunit alpha [Herbaspirillum seropedicae SmR1] emb|CAM32668.1| probable DNA-directed RNA polymerase (alpha chain) protein [Herbaspirillum seropedicae] gb|ADJ61666.1| DNA-directed RNA polymerase alpha chain protein [Herbaspirillum seropedicae SmR1] Length = 325 Score = 615 bits (1585), Expect = e-174, Method: Composition-based stats. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_004751087.1| DNA-directed RNA polymerase subunit alpha [Collimonas fungivorans Ter331] gb|AEK60264.1| DNA-directed RNA polymerase alpha subunit [Collimonas fungivorans Ter331] Length = 325 Score = 592 bits (1527), Expect = e-167, Method: Composition-based stats. Identities = 311/325 (95%), Positives = 317/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEALGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKK+GEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LT GG LDMQIKVEKGRGYVPGNVRRL+ED NKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGALDMQIKVEKGRGYVPGNVRRLTEDANKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLV+NIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEA AEAP Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAAAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >ref|ZP_08274694.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31838.1| DNA-directed RNA polymerase alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 325 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 310/325 (95%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVETL GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRDEVTLTLKK+GEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDMLLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRL+ED NKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLAEDANKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 Y+VESARVEQRTDLDKLV+NIETNGVI+PEEAIRQSARVLVDQLNVFAALEGTEA AEAP Sbjct: 181 YSVESARVEQRTDLDKLVINIETNGVISPEEAIRQSARVLVDQLNVFAALEGTEAAAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPSVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_001101371.1| DNA-directed RNA polymerase subunit alpha [Herminiimonas arsenicoxydans] sp|A4G9R3|RPOA_HERAR RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha emb|CAL63250.1| RNA polymerase, alpha subunit [Herminiimonas arsenicoxydans] Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Composition-based stats. Identities = 310/325 (95%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKKEGEGAVLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKEGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLV+NIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEA A+AP Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAPADAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >ref|YP_001355075.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp. Marseille] sp|A6T3H8|RPOA_JANMA RecName: Full=DNA-directed RNA polymerase subunit alpha; Short=RNAP subunit alpha; AltName: Full=RNA polymerase subunit alpha; AltName: Full=Transcriptase subunit alpha gb|ABR88933.1| DNA-directed RNA polymerase subunit alpha [Janthinobacterium sp. Marseille] Length = 325 Score = 588 bits (1515), Expect = e-166, Method: Composition-based stats. Identities = 308/325 (94%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKK+GEGAVLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKDGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLV+NIETNGVI+PEEAIRQSARVLVDQLNVFAALEGTEA A+AP Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVISPEEAIRQSARVLVDQLNVFAALEGTEAPADAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325