BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0354.p         (143 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773573.1| 30S ribosomal protein S4 [Herbaspirillum ser...   252   1e-65
ref|YP_001101372.1| 30S ribosomal protein S4 [Herminiimonas arse...   230   4e-59
ref|YP_004751086.1| 30S ribosomal protein S4p (S9e) [Collimonas ...   229   8e-59
ref|YP_001355076.1| 30S ribosomal protein S4 [Janthinobacterium ...   229   1e-58
ref|YP_001859032.1| 30S ribosomal protein S4 [Burkholderia phyma...   223   8e-57

>ref|YP_003773573.1| 30S ribosomal protein S4 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61665.1| 30S ribosomal subunit S4 protein [Herbaspirillum seropedicae SmR1]
          Length = 207

 Score =  252 bits (644), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 142/143 (99%), Positives = 143/143 (100%)

Query: 1   MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 60
           MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL
Sbjct: 65  MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 124

Query: 61  TVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 120
           TVNGQVVNIASYSVKAGDVIA+REKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK
Sbjct: 125 TVNGQVVNIASYSVKAGDVIAVREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 184

Query: 121 SSPDRSEIAADVNESLIVELYSR 143
           SSPDRSEIAADVNESLIVELYSR
Sbjct: 185 SSPDRSEIAADVNESLIVELYSR 207


>ref|YP_001101372.1| 30S ribosomal protein S4 [Herminiimonas arsenicoxydans]
 sp|A4G9R4|RS4_HERAR RecName: Full=30S ribosomal protein S4
 emb|CAL63251.1| 30S ribosomal subunit protein S4 [Herminiimonas arsenicoxydans]
          Length = 207

 Score =  230 bits (587), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 124/143 (86%), Positives = 132/143 (92%)

Query: 1   MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 60
           MYG+LERQFRRYFAEADRRKGNTGETLLKLLE+RLDNVVYRMGFGSTRAE RQLVSHKA 
Sbjct: 65  MYGILERQFRRYFAEADRRKGNTGETLLKLLETRLDNVVYRMGFGSTRAEGRQLVSHKAF 124

Query: 61  TVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 120
           TVNG VVNIASY VK GD++A+REK+KKQVRI EALSLAE  G P WV+VDSKK+EGTFK
Sbjct: 125 TVNGIVVNIASYQVKPGDIVAVREKSKKQVRIVEALSLAEQIGMPSWVAVDSKKMEGTFK 184

Query: 121 SSPDRSEIAADVNESLIVELYSR 143
           S PDRSEIAADVNESLIVELYSR
Sbjct: 185 SVPDRSEIAADVNESLIVELYSR 207


>ref|YP_004751086.1| 30S ribosomal protein S4p (S9e) [Collimonas fungivorans Ter331]
 gb|AEK60263.1| SSU ribosomal protein S4p (S9e) [Collimonas fungivorans Ter331]
          Length = 207

 Score =  229 bits (585), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 124/143 (86%), Positives = 131/143 (91%)

Query: 1   MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 60
           MYG+LERQFRRYFAEADRRKGNTGETLL+LLE+RLDNVVYRMGFGSTRAE RQLVSHKA 
Sbjct: 65  MYGILERQFRRYFAEADRRKGNTGETLLRLLEARLDNVVYRMGFGSTRAEGRQLVSHKAF 124

Query: 61  TVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 120
           TVNG VVNIASY VK GDVIA+REKAKKQVRI EALSLAE  G P WVSVD+KK+EGTFK
Sbjct: 125 TVNGNVVNIASYQVKTGDVIAVREKAKKQVRIVEALSLAEQGGMPSWVSVDAKKMEGTFK 184

Query: 121 SSPDRSEIAADVNESLIVELYSR 143
           S PDR+EIA DVNESLIVELYSR
Sbjct: 185 SLPDRNEIANDVNESLIVELYSR 207


>ref|YP_001355076.1| 30S ribosomal protein S4 [Janthinobacterium sp. Marseille]
 sp|A6T3H9|RS4_JANMA RecName: Full=30S ribosomal protein S4
 gb|ABR88890.1| small subunit ribosomal protein S4 [Janthinobacterium sp.
           Marseille]
          Length = 207

 Score =  229 bits (583), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 123/143 (86%), Positives = 133/143 (93%)

Query: 1   MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 60
           MYG+LERQFRRYFAEADRRKGNTGETLLKLLE+RLDNVVYRMGFGSTRAE RQLVSHKA 
Sbjct: 65  MYGILERQFRRYFAEADRRKGNTGETLLKLLEARLDNVVYRMGFGSTRAEGRQLVSHKAF 124

Query: 61  TVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 120
           TVNG VVNIASY VK GDVIA+REK+KKQVRI EALSLAE +G P WVSVD+KK+EGT+K
Sbjct: 125 TVNGIVVNIASYQVKPGDVIAVREKSKKQVRIVEALSLAEQSGMPSWVSVDAKKMEGTYK 184

Query: 121 SSPDRSEIAADVNESLIVELYSR 143
           ++PDRSEIA DVNESLIVELYSR
Sbjct: 185 AAPDRSEIANDVNESLIVELYSR 207


>ref|YP_001859032.1| 30S ribosomal protein S4 [Burkholderia phymatum STM815]
 sp|B2JI40|RS4_BURP8 RecName: Full=30S ribosomal protein S4
 gb|ACC71986.1| ribosomal protein S4 [Burkholderia phymatum STM815]
          Length = 207

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 121/143 (84%), Positives = 129/143 (90%)

Query: 1   MYGVLERQFRRYFAEADRRKGNTGETLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAL 60
           +YGVLERQFRRYFAEADRRKGNTGE LLKLLESRLDNVVYRMGFGSTRAEARQLVSHKA+
Sbjct: 65  IYGVLERQFRRYFAEADRRKGNTGENLLKLLESRLDNVVYRMGFGSTRAEARQLVSHKAI 124

Query: 61  TVNGQVVNIASYSVKAGDVIAIREKAKKQVRIAEALSLAESNGFPQWVSVDSKKLEGTFK 120
           TVNG V NI S  VKAGDVIA+RE+AKKQ RI EALSLAE  G PQWV+VDSKK EGTFK
Sbjct: 125 TVNGVVANIPSLQVKAGDVIAVREQAKKQARILEALSLAEQGGLPQWVAVDSKKFEGTFK 184

Query: 121 SSPDRSEIAADVNESLIVELYSR 143
           S P+RS+IA D+NESLIVELYSR
Sbjct: 185 SMPERSDIAGDINESLIVELYSR 207