BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0353.p (134 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773572.1| 30S ribosomal protein S11 [Herbaspirillum se... 226 6e-58 ref|YP_004751085.1| 30S ribosomal protein S11p (S14e) [Collimona... 213 9e-54 ref|ZP_08274692.1| SSU ribosomal protein S11p (S14e) [Oxalobacte... 211 4e-53 ref|YP_560647.1| 30S ribosomal protein S11 [Burkholderia xenovor... 205 2e-51 ref|YP_004028723.1| SSU ribosomal protein S11P [Burkholderia rhi... 204 5e-51 >ref|YP_003773572.1| 30S ribosomal protein S11 [Herbaspirillum seropedicae SmR1] gb|ADJ61664.1| 30S ribosomal subunit S11 protein [Herbaspirillum seropedicae SmR1] Length = 134 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 134/134 (100%), Positives = 134/134 (100%) Query: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP Sbjct: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 Query: 121 VPHNGCRPPKRRRI 134 VPHNGCRPPKRRRI Sbjct: 121 VPHNGCRPPKRRRI 134 >ref|YP_004751085.1| 30S ribosomal protein S11p (S14e) [Collimonas fungivorans Ter331] gb|AEK60262.1| SSU ribosomal protein S11p (S14e) [Collimonas fungivorans Ter331] Length = 134 Score = 213 bits (541), Expect = 9e-54, Method: Composition-based stats. Identities = 129/134 (96%), Positives = 134/134 (100%) Query: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAKSPNNAAA+RVRKKVKKNVAEGIAH+HASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKSPNNAAAARVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 RKSTPFAAQVAAE+AGKVA+ECG+KNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP Sbjct: 61 RKSTPFAAQVAAEAAGKVAVECGVKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 Query: 121 VPHNGCRPPKRRRI 134 VPHNGCRPPKRRRI Sbjct: 121 VPHNGCRPPKRRRI 134 >ref|ZP_08274692.1| SSU ribosomal protein S11p (S14e) [Oxalobacteraceae bacterium IMCC9480] gb|EGF31836.1| SSU ribosomal protein S11p (S14e) [Oxalobacteraceae bacterium IMCC9480] Length = 134 Score = 211 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 126/134 (94%), Positives = 134/134 (100%) Query: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAK+PNNAA++RVRKKVKKNVAEGIAH+HASFNNTIITITDRQGNALSWATSGGAGFKGS Sbjct: 1 MAKAPNNAASARVRKKVKKNVAEGIAHIHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 Query: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 RKSTPFAAQVAAE+AGK+A+ECG+KNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP Sbjct: 61 RKSTPFAAQVAAEAAGKIAVECGVKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 Query: 121 VPHNGCRPPKRRRI 134 VPHNGCRPPKRRRI Sbjct: 121 VPHNGCRPPKRRRI 134 >ref|YP_560647.1| 30S ribosomal protein S11 [Burkholderia xenovorans LB400] ref|ZP_02886847.1| ribosomal protein S11 [Burkholderia graminis C4D1M] ref|YP_001859033.1| 30S ribosomal protein S11 [Burkholderia phymatum STM815] ref|YP_001897234.1| 30S ribosomal protein S11 [Burkholderia phytofirmans PsJN] ref|ZP_03270075.1| ribosomal protein S11 [Burkholderia sp. H160] ref|YP_003606432.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] ref|ZP_06846058.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] ref|YP_003908455.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] ref|YP_004229731.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] sp|Q13TJ4|RS11_BURXL RecName: Full=30S ribosomal protein S11 gb|ABE32595.1| SSU ribosomal protein S11P [Burkholderia xenovorans LB400] gb|EDT07496.1| ribosomal protein S11 [Burkholderia graminis C4D1M] gb|ACC71987.1| ribosomal protein S11 [Burkholderia phymatum STM815] gb|ACD18010.1| ribosomal protein S11 [Burkholderia phytofirmans PsJN] gb|EDZ98324.1| ribosomal protein S11 [Burkholderia sp. H160] gb|ADG16921.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1002] gb|EFG66293.1| 30S ribosomal protein S11 [Burkholderia sp. Ch1-1] gb|ADN59164.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1003] gb|ADX56671.1| 30S ribosomal protein S11 [Burkholderia sp. CCGE1001] Length = 134 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 118/134 (88%), Positives = 126/134 (94%) Query: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAK+ NN+AA RVRKKVKKNVAEG+ HVHASFNNTIITITDRQGNAL+WATSGG GFKGS Sbjct: 1 MAKASNNSAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGS 60 Query: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 RKSTPFAAQVAAESAG+VA+E G+KNLEVRIKGPGPGRESAVRAL+ LGIKIT I DVTP Sbjct: 61 RKSTPFAAQVAAESAGRVAMEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITAISDVTP 120 Query: 121 VPHNGCRPPKRRRI 134 VPHNGCRPPKRRRI Sbjct: 121 VPHNGCRPPKRRRI 134 >ref|YP_004028723.1| SSU ribosomal protein S11P [Burkholderia rhizoxinica HKI 454] emb|CBW74579.1| SSU ribosomal protein S11P [Burkholderia rhizoxinica HKI 454] Length = 134 Score = 204 bits (518), Expect = 5e-51, Method: Composition-based stats. Identities = 117/134 (87%), Positives = 126/134 (94%) Query: 1 MAKSPNNAAASRVRKKVKKNVAEGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGS 60 MAK+ N++AA RVRKKVKKNVAEG+ HVHASFNNTIITITDRQGNAL+WATSGG GFKGS Sbjct: 1 MAKASNSSAAQRVRKKVKKNVAEGVVHVHASFNNTIITITDRQGNALAWATSGGQGFKGS 60 Query: 61 RKSTPFAAQVAAESAGKVAIECGIKNLEVRIKGPGPGRESAVRALNNLGIKITQIQDVTP 120 RKSTPFAAQVAAESAG+VA+E G+KNLEVRIKGPGPGRESAVRAL+ LGIKIT I DVTP Sbjct: 61 RKSTPFAAQVAAESAGRVAVEYGVKNLEVRIKGPGPGRESAVRALHGLGIKITSISDVTP 120 Query: 121 VPHNGCRPPKRRRI 134 VPHNGCRPPKRRRI Sbjct: 121 VPHNGCRPPKRRRI 134