BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0352.p         (121 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773571.1| 30S ribosomal protein S13 [Herbaspirillum se...   215   2e-54
ref|YP_004751084.1| 30S ribosomal protein S13p (S18e) [Collimona...   202   1e-50
ref|YP_001355078.1| 30S ribosomal protein S13 [Janthinobacterium...   201   2e-50
ref|YP_001101374.1| 30S ribosomal protein S13 [Herminiimonas ars...   200   7e-50
ref|ZP_04577867.1| 30S ribosomal subunit protein S13 [Oxalobacte...   198   2e-49

>ref|YP_003773571.1| 30S ribosomal protein S13 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61663.1| 30S ribosomal subunit S13 protein [Herbaspirillum seropedicae SmR1]
          Length = 121

 Score =  215 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI
Sbjct: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
           AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK
Sbjct: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|YP_004751084.1| 30S ribosomal protein S13p (S18e) [Collimonas fungivorans Ter331]
 gb|AEK60261.1| SSU ribosomal protein S13p (S18e) [Collimonas fungivorans Ter331]
          Length = 121

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 110/121 (90%), Positives = 117/121 (96%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVNIPNHQHTVIGLTAIYG+GRPRAQ+IC +TG+ T KK+KDLDDNELEKLRDEI
Sbjct: 1   MARIAGVNIPNHQHTVIGLTAIYGVGRPRAQEICDSTGILTTKKIKDLDDNELEKLRDEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
           AKFVVEGDLRRELSMNIKRLMDLGCYRG+RHR+GLP RGQRTRTNARTRKGPRKAAQSLK
Sbjct: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|YP_001355078.1| 30S ribosomal protein S13 [Janthinobacterium sp. Marseille]
 sp|A6T3I1|RS13_JANMA RecName: Full=30S ribosomal protein S13
 gb|ABR89177.1| small subunit ribosomal protein S13 [Janthinobacterium sp.
           Marseille]
          Length = 121

 Score =  201 bits (512), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/121 (90%), Positives = 115/121 (95%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVN+PNHQHTVIGLTAIYGIGRPR+Q IC   GVPT KKVKDLDDNELEKLRDEI
Sbjct: 1   MARIAGVNVPNHQHTVIGLTAIYGIGRPRSQKICDTAGVPTTKKVKDLDDNELEKLRDEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
           AKF+VEGDLRRELSMNIKRLMDLGCYRG+RHR+GLP RGQRTRTNARTRKGPRKAAQSLK
Sbjct: 61  AKFIVEGDLRRELSMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|YP_001101374.1| 30S ribosomal protein S13 [Herminiimonas arsenicoxydans]
 sp|A4G9R6|RS13_HERAR RecName: Full=30S ribosomal protein S13
 emb|CAL63253.1| 30S ribosomal subunit protein S13 [Herminiimonas arsenicoxydans]
          Length = 121

 Score =  200 bits (508), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 110/121 (90%), Positives = 116/121 (95%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVN+PNHQHTVIGLTAIYGIGRPRAQ IC ATGV T KKVKDLDD+ELEKLRDEI
Sbjct: 1   MARIAGVNVPNHQHTVIGLTAIYGIGRPRAQKICDATGVLTTKKVKDLDDSELEKLRDEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
           AKF+VEGDLRRE+SMNIKRLMDLGCYRG+RHR+GLP RGQRTRTNARTRKGPRKAAQSLK
Sbjct: 61  AKFIVEGDLRREISMNIKRLMDLGCYRGMRHRKGLPCRGQRTRTNARTRKGPRKAAQSLK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>ref|ZP_04577867.1| 30S ribosomal subunit protein S13 [Oxalobacter formigenes HOxBLS]
 gb|EEO28829.1| 30S ribosomal subunit protein S13 [Oxalobacter formigenes HOxBLS]
          Length = 121

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 110/121 (90%), Positives = 116/121 (95%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVNIPNHQH VIGLTAIYGIGRPRA+DICAATGV   KKVKDLDD+ELEKLR+EI
Sbjct: 1   MARIAGVNIPNHQHIVIGLTAIYGIGRPRAEDICAATGVAPTKKVKDLDDSELEKLREEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
            KFV+EGDLRRE+SM+IKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK
Sbjct: 61  DKFVIEGDLRREVSMSIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120

Query: 121 K 121
           K
Sbjct: 121 K 121