BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0351.p         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001101375.1| translation initiation factor IF-1 [Herminii...   139   1e-31
ref|YP_004751082.1| protein chain initiation factor IF-1 [Collim...   139   2e-31
ref|YP_727899.1| translation initiation factor IF-1 [Ralstonia e...   138   2e-31
ref|YP_585437.1| translation initiation factor IF-1 [Cupriavidus...   138   3e-31
ref|ZP_04580016.1| translation initiation factor IF-1 [Oxalobact...   138   3e-31

>ref|YP_001101375.1| translation initiation factor IF-1 [Herminiimonas arsenicoxydans]
 ref|YP_001355080.1| translation initiation factor IF-1 [Janthinobacterium sp.
          Marseille]
 ref|YP_003773569.1| translation initiation factor IF-1 [Herbaspirillum seropedicae
          SmR1]
 ref|ZP_08274147.1| Translation initiation factor 1 [Oxalobacteraceae bacterium
          IMCC9480]
 sp|A6T3I3|IF1_JANMA RecName: Full=Translation initiation factor IF-1
 sp|A4G9R7|IF1_HERAR RecName: Full=Translation initiation factor IF-1
 emb|CAL63254.1| Translation initiation factor IF-1 [Herminiimonas arsenicoxydans]
 gb|ABR91375.1| translation initiation factor IF-1 [Janthinobacterium sp.
          Marseille]
 gb|ADJ61661.1| translation initiation factor (IF-1) protein [Herbaspirillum
          seropedicae SmR1]
 gb|EGF32377.1| Translation initiation factor 1 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 72

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/72 (100%), Positives = 72/72 (100%)

Query: 9  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 68
          MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 69 DLSRARIVFRTK 80
          DLSRARIVFRTK
Sbjct: 61 DLSRARIVFRTK 72


>ref|YP_004751082.1| protein chain initiation factor IF-1 [Collimonas fungivorans
          Ter331]
 gb|AEK60259.1| protein chain initiation factor IF-1 [Collimonas fungivorans
          Ter331]
          Length = 72

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 9  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 68
          MAKDDVIQMQGEILENLPNATFRVKLENGH+VLGHISGKMRMNYIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEILENLPNATFRVKLENGHIVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 69 DLSRARIVFRTK 80
          DLSRARIVFRTK
Sbjct: 61 DLSRARIVFRTK 72


>ref|YP_727899.1| translation initiation factor IF-1 [Ralstonia eutropha H16]
 ref|YP_002006908.1| translation initiation factor if-1 [Cupriavidus taiwanensis LMG
          19424]
 ref|YP_004687188.1| translation initiation factor IF-1 [Cupriavidus necator N-1]
 sp|Q0K640|IF12_RALEH RecName: Full=Translation initiation factor IF-1 2
 emb|CAJ94531.1| translation initiation factor 1 (IF-1) [Ralstonia eutropha H16]
 emb|CAQ70847.1| Translation initiation factor IF-1 [Cupriavidus taiwanensis LMG
          19424]
 gb|AEI78707.1| translation initiation factor IF-1 [Cupriavidus necator N-1]
          Length = 72

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 9  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 68
          MAKDDVIQMQGE+LENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 69 DLSRARIVFRTK 80
          DLSRARIVFRTK
Sbjct: 61 DLSRARIVFRTK 72


>ref|YP_585437.1| translation initiation factor IF-1 [Cupriavidus metallidurans
          CH34]
 sp|Q1LI58|IF12_RALME RecName: Full=Translation initiation factor IF-1 2
 gb|ABF10168.1| translation initiation factor IF-1 [Cupriavidus metallidurans
          CH34]
          Length = 72

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/72 (97%), Positives = 72/72 (100%)

Query: 9  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 68
          MAKDDVIQMQGE+LENLPNATFRVKLENGH+VLGHISGKMRMNYIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEVLENLPNATFRVKLENGHIVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 69 DLSRARIVFRTK 80
          DLSRARIVFRTK
Sbjct: 61 DLSRARIVFRTK 72


>ref|ZP_04580016.1| translation initiation factor IF-1 [Oxalobacter formigenes
          OXCC13]
 gb|EEO30989.1| translation initiation factor IF-1 [Oxalobacter formigenes
          OXCC13]
          Length = 72

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/72 (98%), Positives = 72/72 (100%)

Query: 9  MAKDDVIQMQGEILENLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 68
          MAKDDVIQMQGEIL+NLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY
Sbjct: 1  MAKDDVIQMQGEILDNLPNATFRVKLENGHVVLGHISGKMRMNYIRILPGDKVTVELTPY 60

Query: 69 DLSRARIVFRTK 80
          DLSRARIVFRTK
Sbjct: 61 DLSRARIVFRTK 72