BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0348.p         (59 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773566.1| 50S ribosomal protein L30 [Herbaspirillum se...    93   1e-17
ref|YP_004751079.1| 50S ribosomal protein L30p (L7e) [Collimonas...    88   4e-16
ref|YP_001101378.1| 50S ribosomal protein L30 [Herminiimonas ars...    86   2e-15
ref|ZP_08274150.1| 50S ribosomal subunit protein L30 [Oxalobacte...    82   3e-14
gb|AEG67798.1| 50s ribosomal subunit protein l30 [Ralstonia sola...    80   1e-13

>ref|YP_003773566.1| 50S ribosomal protein L30 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61658.1| 50S ribosomal subunit L30 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 59

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/59 (100%), Positives = 59/59 (100%)

Query: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS
Sbjct: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59


>ref|YP_004751079.1| 50S ribosomal protein L30p (L7e) [Collimonas fungivorans Ter331]
 gb|AEK60256.1| LSU ribosomal protein L30p (L7e) [Collimonas fungivorans Ter331]
          Length = 77

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          M  T+KV+L+KGLIGTR+ HRATVRGLGLRRVNSVSEL+DTPSVRGMINKVSYLVKVVS
Sbjct: 19 MTKTVKVQLIKGLIGTRETHRATVRGLGLRRVNSVSELQDTPSVRGMINKVSYLVKVVS 77


>ref|YP_001101378.1| 50S ribosomal protein L30 [Herminiimonas arsenicoxydans]
 ref|YP_001355083.1| 50S ribosomal protein L30 [Janthinobacterium sp. Marseille]
 sp|A6T3I6|RL30_JANMA RecName: Full=50S ribosomal protein L30
 sp|A4G9S0|RL30_HERAR RecName: Full=50S ribosomal protein L30
 emb|CAL63257.1| 50S ribosomal subunit protein L30 [Herminiimonas arsenicoxydans]
 gb|ABR91655.1| 50S ribosomal protein L30 [Janthinobacterium sp. Marseille]
          Length = 59

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 53/59 (89%), Positives = 57/59 (96%)

Query: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          MANT+KVKLVKGLIGTR+ HRATVRGLGLR +NSVSELEDTP+VRGMINKVSYLVKVVS
Sbjct: 1  MANTVKVKLVKGLIGTRETHRATVRGLGLRGINSVSELEDTPAVRGMINKVSYLVKVVS 59


>ref|ZP_08274150.1| 50S ribosomal subunit protein L30 [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32380.1| 50S ribosomal subunit protein L30 [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 62

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 50/59 (84%), Positives = 55/59 (93%)

Query: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          MA T+KV LVKGLIGTR+ HRATVRGLGLR +NSVSELEDTP+VRGMINKVSYLVKV+S
Sbjct: 4  MAKTVKVTLVKGLIGTRETHRATVRGLGLRGINSVSELEDTPAVRGMINKVSYLVKVIS 62


>gb|AEG67798.1| 50s ribosomal subunit protein l30 [Ralstonia solanacearum Po82]
          Length = 63

 Score = 80.1 bits (196), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 46/55 (83%), Positives = 54/55 (98%)

Query: 4  TIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVV 58
          T+KV+LV+ LIGTR+DHRATVRGLGLRR+NSVSEL+DTP+VRGMINKVSYLVKV+
Sbjct: 8  TVKVQLVRSLIGTREDHRATVRGLGLRRMNSVSELQDTPAVRGMINKVSYLVKVI 62