BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0347.p         (172 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773565.1| 30S ribosomal protein S5 [Herbaspirillum ser...   271   3e-71
ref|YP_004751078.1| 30S ribosomal protein S5p (S2e) [Collimonas ...   258   2e-67
ref|YP_001355084.1| 30S ribosomal protein S5 [Janthinobacterium ...   257   4e-67
ref|YP_001101379.1| 30S ribosomal protein S5 [Herminiimonas arse...   256   1e-66
ref|ZP_08274151.1| SSU ribosomal protein S5p (S2e) [Oxalobactera...   250   5e-65

>ref|YP_003773565.1| 30S ribosomal protein S5 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61657.1| 30S ribosomal subunit S5 protein [Herbaspirillum seropedicae SmR1]
          Length = 172

 Score =  271 bits (692), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 172/172 (100%), Positives = 172/172 (100%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK
Sbjct: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172
           FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG
Sbjct: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172


>ref|YP_004751078.1| 30S ribosomal protein S5p (S2e) [Collimonas fungivorans Ter331]
 gb|AEK60255.1| SSU ribosomal protein S5p (S2e) [Collimonas fungivorans Ter331]
          Length = 172

 Score =  258 bits (660), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 160/172 (93%), Positives = 168/172 (97%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSK QSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK
Sbjct: 1   MAKMQSKMQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRK+IKVTLKNGT+QH + GKHGASSV++ PAKDGTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHAISGKHGASSVLMLPAKDGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172
           FEV+GVTNVVAKSTGSTNPYNMVRATL+GLSKMNTP+EIAAKRGKSVEEILG
Sbjct: 121 FEVLGVTNVVAKSTGSTNPYNMVRATLNGLSKMNTPSEIAAKRGKSVEEILG 172


>ref|YP_001355084.1| 30S ribosomal protein S5 [Janthinobacterium sp. Marseille]
 sp|A6T3I7|RS5_JANMA RecName: Full=30S ribosomal protein S5
 gb|ABR88390.1| small subunit ribosomal protein S5 [Janthinobacterium sp.
           Marseille]
          Length = 172

 Score =  257 bits (657), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 162/172 (94%), Positives = 168/172 (97%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSK QSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK
Sbjct: 1   MAKMQSKMQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRK+IKVTLKNGT+QHTV GKHGASSV++ PAKDGTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMLPAKDGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172
           FEVMGVTNVVAKSTGSTNPYNMVRATLDGL+KMNT +EIAAKRGKSVEEILG
Sbjct: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLAKMNTASEIAAKRGKSVEEILG 172


>ref|YP_001101379.1| 30S ribosomal protein S5 [Herminiimonas arsenicoxydans]
 sp|A4G9S1|RS5_HERAR RecName: Full=30S ribosomal protein S5
 emb|CAL63258.1| 30S ribosomal subunit protein S5 [Herminiimonas arsenicoxydans]
          Length = 172

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 160/172 (93%), Positives = 169/172 (98%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSK QS+KPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK
Sbjct: 1   MAKMQSKMQSEKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRK+IKVTLKNGT+QHTV GKHGASSV++ PAK+GTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMLPAKEGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEILG 172
           FEVMGVTNVVAKSTGSTNPYNMVRATL+GL+KMNTP+EIAAKRGKSVEEILG
Sbjct: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLEGLAKMNTPSEIAAKRGKSVEEILG 172


>ref|ZP_08274151.1| SSU ribosomal protein S5p (S2e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32381.1| SSU ribosomal protein S5p (S2e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 172

 Score =  250 bits (639), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 155/171 (90%), Positives = 168/171 (98%)

Query: 1   MAKMQSKTQSDKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGDGRIGMGKGKSK 60
           MAKMQSK QS+KPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDG+GRIGMGKGKSK
Sbjct: 1   MAKMQSKMQSEKPDDGMREKMIAVNRVTKVVKGGRIMGFAALAVVGDGEGRIGMGKGKSK 60

Query: 61  EVPVAVQKAMEEARRKLIKVTLKNGTVQHTVIGKHGASSVMISPAKDGTGVIAGGPMRAI 120
           EVPVAVQKAMEEARRK+IKVTLKNGT+QHTV GKHGASSV+++PAK+GTGVIAGGPMRAI
Sbjct: 61  EVPVAVQKAMEEARRKMIKVTLKNGTLQHTVTGKHGASSVLMAPAKEGTGVIAGGPMRAI 120

Query: 121 FEVMGVTNVVAKSTGSTNPYNMVRATLDGLSKMNTPAEIAAKRGKSVEEIL 171
           FEVMGVTNVVAKS GSTNPYNMVRATL+GL+KMNTP++IAAKRGKSVE+IL
Sbjct: 121 FEVMGVTNVVAKSNGSTNPYNMVRATLNGLAKMNTPSDIAAKRGKSVEDIL 171