BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0346.p         (120 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773564.1| 50S ribosomal protein L18 [Herbaspirillum se...   168   2e-40
ref|YP_004751077.1| 50S ribosomal protein L18p (L5e) [Collimonas...   157   7e-37
ref|YP_001355085.1| large subunit ribosomal protein L18 [Janthin...   155   1e-36
ref|ZP_04580011.1| large subunit ribosomal protein L18 [Oxalobac...   143   7e-33
ref|ZP_04577861.1| large subunit ribosomal protein L18 [Oxalobac...   141   3e-32

>ref|YP_003773564.1| 50S ribosomal protein L18 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61656.1| 50S ribosomal subunit L18 protein [Herbaspirillum seropedicae SmR1]
          Length = 120

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 120/120 (100%), Positives = 120/120 (100%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ
Sbjct: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120


>ref|YP_004751077.1| 50S ribosomal protein L18p (L5e) [Collimonas fungivorans Ter331]
 gb|AEK60254.1| LSU ribosomal protein L18p (L5e) [Collimonas fungivorans Ter331]
          Length = 122

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 106/120 (88%), Positives = 114/120 (95%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           MDKKQSRLRR+ QTRAKIAELKVNRLAVHRTN HIYAS+IGPDA VLASASTLEAEVRA+
Sbjct: 3   MDKKQSRLRRSRQTRAKIAELKVNRLAVHRTNLHIYASIIGPDAKVLASASTLEAEVRAE 62

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           LAG++G GGN AAA+L+GKRVAEKALKAGVTEVAFDRSGFRYHGRVK LA+AAREAGLKF
Sbjct: 63  LAGKSGAGGNTAAASLVGKRVAEKALKAGVTEVAFDRSGFRYHGRVKVLADAAREAGLKF 122


>ref|YP_001355085.1| large subunit ribosomal protein L18 [Janthinobacterium sp.
           Marseille]
 sp|A6T3I8|RL18_JANMA RecName: Full=50S ribosomal protein L18
 gb|ABR88905.1| large subunit ribosomal protein L18 [Janthinobacterium sp.
           Marseille]
          Length = 120

 Score =  155 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 107/120 (89%), Positives = 113/120 (94%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           MDKKQSRLRR  QTRAKIAELKVNRLAVHRTN HIYAS+IGPDA VLASASTLEAEVR +
Sbjct: 1   MDKKQSRLRRGRQTRAKIAELKVNRLAVHRTNLHIYASIIGPDATVLASASTLEAEVRQE 60

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           LAGQ+GKGGN AAAAL+GKRVAEKALKAG+ EVAFDRSGFRYHGRVKA+AEAAREAGLKF
Sbjct: 61  LAGQSGKGGNVAAAALVGKRVAEKALKAGIAEVAFDRSGFRYHGRVKAVAEAAREAGLKF 120


>ref|ZP_04580011.1| large subunit ribosomal protein L18 [Oxalobacter formigenes OXCC13]
 gb|EEO30984.1| large subunit ribosomal protein L18 [Oxalobacter formigenes OXCC13]
          Length = 118

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 96/120 (80%), Positives = 106/120 (88%), Gaps = 2/120 (1%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           M+KKQSRLRR  QTRAKIA LK  RL+VHRTN HIYA+VIGPDA +LAS+STLEA++R Q
Sbjct: 1   MNKKQSRLRRGRQTRAKIAVLKATRLSVHRTNLHIYANVIGPDAKILASSSTLEADIRQQ 60

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           L G+ G  GN AAA L+GKRVAEKAL+AGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LDGKNG--GNVAAATLVGKRVAEKALQAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 118


>ref|ZP_04577861.1| large subunit ribosomal protein L18 [Oxalobacter formigenes HOxBLS]
 gb|EEO28823.1| large subunit ribosomal protein L18 [Oxalobacter formigenes HOxBLS]
          Length = 118

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 95/120 (79%), Positives = 109/120 (90%), Gaps = 2/120 (1%)

Query: 1   MDKKQSRLRRATQTRAKIAELKVNRLAVHRTNTHIYASVIGPDANVLASASTLEAEVRAQ 60
           M+KKQSRLRR  QTRAKIA LK  RL+VHRTN HIYA+VIGPDA +LAS+STLEA++R +
Sbjct: 1   MNKKQSRLRRGRQTRAKIAVLKATRLSVHRTNLHIYANVIGPDARILASSSTLEADIRQE 60

Query: 61  LAGQTGKGGNAAAAALIGKRVAEKALKAGVTEVAFDRSGFRYHGRVKALAEAAREAGLKF 120
           LAG++  GGN AAA+L+GKRVAEKAL+AG+TEVAFDRSGFRYHGRVKALAEAAREAGLKF
Sbjct: 61  LAGKS--GGNVAAASLVGKRVAEKALQAGITEVAFDRSGFRYHGRVKALAEAAREAGLKF 118