BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0345.p         (177 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773563.1| 50S ribosomal protein L6 [Herbaspirillum ser...   317   5e-85
ref|YP_004751076.1| 50S ribosomal protein L6p (L9e) [Collimonas ...   284   3e-75
ref|YP_001355086.1| large subunit ribosomal protein L6 [Janthino...   279   9e-74
ref|YP_001101381.1| 50S ribosomal protein L6 [Herminiimonas arse...   275   2e-72
ref|YP_001859042.1| 50S ribosomal protein L6 [Burkholderia phyma...   250   6e-65

>ref|YP_003773563.1| 50S ribosomal protein L6 [Herbaspirillum seropedicae SmR1]
 emb|CAM32699.1| 50S ribosomal subunit protein L6/L9E [Herbaspirillum seropedicae]
 gb|ADJ61655.1| 50S ribosomal subunit L6 protein [Herbaspirillum seropedicae SmR1]
          Length = 177

 Score =  317 bits (811), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 176/177 (99%), Positives = 177/177 (100%)

Query: 1   MSRVGKMPVALPNGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60
           MSRVGKMPVALP+GAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE
Sbjct: 1   MSRVGKMPVALPSGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120

Query: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177
           IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK
Sbjct: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177


>ref|YP_004751076.1| 50S ribosomal protein L6p (L9e) [Collimonas fungivorans Ter331]
 gb|AEK60253.1| LSU ribosomal protein L6p (L9e) [Collimonas fungivorans Ter331]
          Length = 190

 Score =  284 bits (727), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 153/177 (86%), Positives = 163/177 (92%)

Query: 1   MSRVGKMPVALPNGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60
           MSRVGKMP+ALP GAEATITA QITVKGPLGSL+Q L   VK+ NNNG+L+F  ADDSRE
Sbjct: 14  MSRVGKMPIALPTGAEATITAAQITVKGPLGSLSQALNGLVKIENNNGTLNFAAADDSRE 73

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHP+VHQMP G
Sbjct: 74  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPVVHQMPQG 133

Query: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177
           + V TPTQTEILIKGID+Q VGQVAAE+RAYREPEPYKGKGVRY+DEVV LKETKKK
Sbjct: 134 VTVATPTQTEILIKGIDKQRVGQVAAEVRAYREPEPYKGKGVRYSDEVVILKETKKK 190


>ref|YP_001355086.1| large subunit ribosomal protein L6 [Janthinobacterium sp.
           Marseille]
 sp|A6T3I9|RL6_JANMA RecName: Full=50S ribosomal protein L6
 gb|ABR88995.1| large subunit ribosomal protein L6 [Janthinobacterium sp.
           Marseille]
          Length = 177

 Score =  279 bits (714), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 151/177 (85%), Positives = 165/177 (93%)

Query: 1   MSRVGKMPVALPNGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60
           MSRVGKMP+ALP+GAEATITA QITVKGPLGSLTQ L   V + N+NG+L+F+VA+DSRE
Sbjct: 1   MSRVGKMPIALPSGAEATITAAQITVKGPLGSLTQSLNGLVNIENDNGTLNFKVANDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKL LVGVG+RA AQGDKLNLSLGFSHP+VHQMP G
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLTLVGVGYRAAAQGDKLNLSLGFSHPVVHQMPQG 120

Query: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177
           +KVETPTQTEILIKGIDRQ VGQVAAE+RAYREPEPYKGKGVRY+DEVV +KETKKK
Sbjct: 121 VKVETPTQTEILIKGIDRQKVGQVAAEVRAYREPEPYKGKGVRYSDEVVVIKETKKK 177


>ref|YP_001101381.1| 50S ribosomal protein L6 [Herminiimonas arsenicoxydans]
 sp|A4G9S3|RL6_HERAR RecName: Full=50S ribosomal protein L6
 emb|CAL63260.1| 50S ribosomal subunit protein L6 [Herminiimonas arsenicoxydans]
          Length = 177

 Score =  275 bits (702), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 150/177 (84%), Positives = 164/177 (92%)

Query: 1   MSRVGKMPVALPNGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60
           MSRVGKMP+ALP+GAEATITAEQITVKGPLGSL+Q L   V++ N +G+L+F+ A+DSRE
Sbjct: 1   MSRVGKMPIALPSGAEATITAEQITVKGPLGSLSQALNGLVQIENASGTLNFKPANDSRE 60

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120
           ANAMSGTLRALVNNMVNGVTKGFEKKL LVGVGFRA AQGDKLNLSLGFSHP+VH MPAG
Sbjct: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLMLVGVGFRAAAQGDKLNLSLGFSHPVVHAMPAG 120

Query: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177
           IKVETPTQTEILIKGIDRQ VGQVAAE+RAYR PEPYKGKGVRY+DEVV +KETKKK
Sbjct: 121 IKVETPTQTEILIKGIDRQSVGQVAAEVRAYRPPEPYKGKGVRYSDEVVVIKETKKK 177


>ref|YP_001859042.1| 50S ribosomal protein L6 [Burkholderia phymatum STM815]
 sp|B2JI50|RL6_BURP8 RecName: Full=50S ribosomal protein L6
 gb|ACC71996.1| ribosomal protein L6 [Burkholderia phymatum STM815]
          Length = 176

 Score =  250 bits (639), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 136/177 (76%), Positives = 157/177 (88%), Gaps = 1/177 (0%)

Query: 1   MSRVGKMPVALPNGAEATITAEQITVKGPLGSLTQPLTKKVKVVNNNGSLSFEVADDSRE 60
           MSRVGK P+AL  GAE  ++ E+ITVKGPLGS++Q   + VKVVN+NG+L FE AD+SRE
Sbjct: 1   MSRVGKSPIAL-QGAEVALSDERITVKGPLGSISQNANRLVKVVNDNGTLKFEPADESRE 59

Query: 61  ANAMSGTLRALVNNMVNGVTKGFEKKLNLVGVGFRAQAQGDKLNLSLGFSHPIVHQMPAG 120
           ANAMSGT+RALV NMV+GVTKGFE+KL LVGVG+RAQAQGDKLNLSLGFSHP+VHQMP G
Sbjct: 60  ANAMSGTMRALVANMVHGVTKGFERKLTLVGVGYRAQAQGDKLNLSLGFSHPVVHQMPEG 119

Query: 121 IKVETPTQTEILIKGIDRQVVGQVAAEIRAYREPEPYKGKGVRYADEVVTLKETKKK 177
           +K ETP+QTEI+IKGID+Q VGQVAAE+R YR PEPYKGKGVRYA+EVV LKETKKK
Sbjct: 120 VKAETPSQTEIVIKGIDKQKVGQVAAEVRGYRPPEPYKGKGVRYANEVVILKETKKK 176