BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0344.p         (131 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773562.1| 30S ribosomal protein S8 [Herbaspirillum ser...   234   3e-60
ref|YP_001355087.1| small subunit ribosomal protein S8 [Janthino...   221   3e-56
ref|YP_004751075.1| 30S ribosomal protein S8p (S15Ae) [Collimona...   219   1e-55
ref|YP_001101382.1| 30S ribosomal protein S8 [Herminiimonas arse...   218   3e-55
ref|YP_585444.1| 30S ribosomal protein S8 [Cupriavidus metallidu...   206   7e-52

>ref|YP_003773562.1| 30S ribosomal protein S8 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61654.1| 30S ribosomal subunit S8 protein [Herbaspirillum seropedicae SmR1]
          Length = 131

 Score =  234 bits (598), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Query: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60
           MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_001355087.1| small subunit ribosomal protein S8 [Janthinobacterium sp.
           Marseille]
 sp|A6T3J0|RS8_JANMA RecName: Full=30S ribosomal protein S8
 gb|ABR89087.1| small subunit ribosomal protein S8 [Janthinobacterium sp.
           Marseille]
          Length = 131

 Score =  221 bits (562), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 122/131 (93%), Positives = 125/131 (95%)

Query: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60
           MSMSDPIADMLTRIRNAQ V KT+V MPSSKVK+AIANVLKDEGYIEDFAV  A GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDFAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_004751075.1| 30S ribosomal protein S8p (S15Ae) [Collimonas fungivorans Ter331]
 gb|AEK60252.1| SSU ribosomal protein S8p (S15Ae) [Collimonas fungivorans Ter331]
          Length = 131

 Score =  219 bits (557), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 120/131 (91%), Positives = 124/131 (94%)

Query: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60
           MSMSDPIADMLTRIRNAQ V+KTTV MPSSKVK+AIANVLKDEGYIEDFAV    GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVHKTTVAMPSSKVKIAIANVLKDEGYIEDFAVAEEGGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERL+RVSRPGLRIYKGKDDIPNVMNGLGVAI+STP GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLDRVSRPGLRIYKGKDDIPNVMNGLGVAIISTPAGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_001101382.1| 30S ribosomal protein S8 [Herminiimonas arsenicoxydans]
 sp|A4G9S4|RS8_HERAR RecName: Full=30S ribosomal protein S8
 emb|CAL63261.1| 30S ribosomal protein S8 [Herminiimonas arsenicoxydans]
          Length = 131

 Score =  218 bits (554), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 120/131 (91%), Positives = 125/131 (95%)

Query: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60
           MSMSDPIADMLTRIRNAQ V KT+V MPSSKVK+AIANVLKDEGYIED+AV  A GKAEL
Sbjct: 1   MSMSDPIADMLTRIRNAQVVQKTSVAMPSSKVKIAIANVLKDEGYIEDYAVTEAAGKAEL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
           KIGLKYYAGRPVIERLERVSRPGLR+YKGKDDIPNVMNGLGVAIVSTP+GVMTDRKARAT
Sbjct: 61  KIGLKYYAGRPVIERLERVSRPGLRVYKGKDDIPNVMNGLGVAIVSTPKGVMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEVICYVA
Sbjct: 121 GVGGEVICYVA 131


>ref|YP_585444.1| 30S ribosomal protein S8 [Cupriavidus metallidurans CH34]
 sp|Q1LI51|RS8_RALME RecName: Full=30S ribosomal protein S8
 gb|ABF10175.1| 30S ribosomal subunit protein S8 [Cupriavidus metallidurans CH34]
          Length = 131

 Score =  206 bits (525), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 107/131 (81%), Positives = 121/131 (92%)

Query: 1   MSMSDPIADMLTRIRNAQGVNKTTVVMPSSKVKVAIANVLKDEGYIEDFAVVAADGKAEL 60
           MSMSDPIADMLTRIRNAQGV K +VVMPSSK+K AIA VLKDEGY+EDF+V    GKA+L
Sbjct: 1   MSMSDPIADMLTRIRNAQGVQKASVVMPSSKLKAAIAKVLKDEGYVEDFSVQEEGGKAQL 60

Query: 61  KIGLKYYAGRPVIERLERVSRPGLRIYKGKDDIPNVMNGLGVAIVSTPRGVMTDRKARAT 120
            IGLKYYAGRPVIER+ERVS+PGLR+YKG+ DIP+VMNGLGVAI+STP+G+MTDRKARAT
Sbjct: 61  TIGLKYYAGRPVIERIERVSKPGLRVYKGRSDIPHVMNGLGVAIISTPQGLMTDRKARAT 120

Query: 121 GVGGEVICYVA 131
           GVGGEV+CYVA
Sbjct: 121 GVGGEVLCYVA 131