BLASTP 2.2.17 [Aug-26-2007] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= 0001.0342.p (179 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773560.1| 50S ribosomal protein L5 [Herbaspirillum ser... 342 2e-92 ref|YP_004751073.1| 50S ribosomal protein L5p (L11e) [Collimonas... 332 1e-89 ref|YP_001355089.1| large subunit ribosomal protein L5 [Janthino... 330 8e-89 ref|YP_001101384.1| 50S ribosomal protein L5 [Herminiimonas arse... 327 6e-88 ref|NP_882137.1| 50S ribosomal protein L5 [Bordetella pertussis ... 312 1e-83 >ref|YP_003773560.1| 50S ribosomal protein L5 [Herbaspirillum seropedicae SmR1] gb|ADJ61652.1| 50S ribosomal subunit L5 protein [Herbaspirillum seropedicae SmR1] Length = 179 Score = 342 bits (876), Expect = 2e-92, Method: Composition-based stats. Identities = 179/179 (100%), Positives = 179/179 (100%) Query: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI Sbjct: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 Query: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR Sbjct: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 >ref|YP_004751073.1| 50S ribosomal protein L5p (L11e) [Collimonas fungivorans Ter331] gb|AEK60250.1| LSU ribosomal protein L5p (L11e) [Collimonas fungivorans Ter331] Length = 179 Score = 332 bits (851), Expect = 1e-89, Method: Composition-based stats. Identities = 171/179 (95%), Positives = 176/179 (98%) Query: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 MARLQ+FYKDKVV DLT KY+YKSVMEVPRILKITLNMGLSEA+ADKKIIEHAVGDLTKI Sbjct: 1 MARLQEFYKDKVVTDLTAKYAYKSVMEVPRILKITLNMGLSEAIADKKIIEHAVGDLTKI 60 Query: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA+MYEFLDRLITVALPRVRDFRGVSGR Sbjct: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAQMYEFLDRLITVALPRVRDFRGVSGR 120 Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 AFDGRGNYNIGVKEQIIFPEIEYDKID LRGMNISITTTAKTDDEAK+LLAAFKFPFRN Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDVLRGMNISITTTAKTDDEAKSLLAAFKFPFRN 179 >ref|YP_001355089.1| large subunit ribosomal protein L5 [Janthinobacterium sp. Marseille] sp|A6T3J2|RL5_JANMA RecName: Full=50S ribosomal protein L5 gb|ABR88635.1| large subunit ribosomal protein L5 [Janthinobacterium sp. Marseille] Length = 179 Score = 330 bits (845), Expect = 8e-89, Method: Composition-based stats. Identities = 170/179 (94%), Positives = 175/179 (97%) Query: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 MARLQ+FYK+KVV DLT K++YKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI Sbjct: 1 MARLQEFYKEKVVGDLTAKFAYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 Query: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA MYEFLDR ITVALPRVRDFRGVSG+ Sbjct: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAHMYEFLDRFITVALPRVRDFRGVSGK 120 Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 >ref|YP_001101384.1| 50S ribosomal protein L5 [Herminiimonas arsenicoxydans] sp|A4G9S6|RL5_HERAR RecName: Full=50S ribosomal protein L5 emb|CAL63263.1| 50S ribosomal subunit protein L5 [Herminiimonas arsenicoxydans] Length = 179 Score = 327 bits (837), Expect = 6e-88, Method: Composition-based stats. Identities = 167/179 (93%), Positives = 175/179 (97%) Query: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 MARLQ+FYK+KVV DLT K++YKS MEVPRILKITLNMGLSEA+ADKKIIEHAVGDLTKI Sbjct: 1 MARLQEFYKEKVVGDLTAKFAYKSAMEVPRILKITLNMGLSEAIADKKIIEHAVGDLTKI 60 Query: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGA+MYEFLDR ITVALPRVRDFRG+SG+ Sbjct: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGAQMYEFLDRFITVALPRVRDFRGISGK 120 Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 >ref|NP_882137.1| 50S ribosomal protein L5 [Bordetella pertussis Tohama I] ref|NP_882407.1| 50S ribosomal protein L5 [Bordetella parapertussis 12822] ref|NP_886596.1| 50S ribosomal protein L5 [Bordetella bronchiseptica RB50] sp|Q7VTB9|RL5_BORPE RecName: Full=50S ribosomal protein L5 sp|Q7W2E3|RL5_BORPA RecName: Full=50S ribosomal protein L5 sp|Q7WRB1|RL5_BORBR RecName: Full=50S ribosomal protein L5 emb|CAE43885.1| 50S ribosomal protein L5 [Bordetella pertussis Tohama I] emb|CAE39784.1| 50S ribosomal protein L5 [Bordetella parapertussis] emb|CAE30545.1| 50S ribosomal protein L5 [Bordetella bronchiseptica RB50] gb|AEE68751.1| 50S ribosomal protein L5 [Bordetella pertussis CS] Length = 179 Score = 312 bits (800), Expect = 1e-83, Method: Composition-based stats. Identities = 157/179 (87%), Positives = 166/179 (92%) Query: 1 MARLQQFYKDKVVADLTTKYSYKSVMEVPRILKITLNMGLSEAVADKKIIEHAVGDLTKI 60 M+RLQ+FYK KVVADL K+ YK VMEVPRI KITLNMG+SEAVADKK+IEHAV DLTKI Sbjct: 1 MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVADKKVIEHAVSDLTKI 60 Query: 61 AGQKPVVTKARKAIAGFKIREGYPIGCMVTLRGARMYEFLDRLITVALPRVRDFRGVSGR 120 +GQKPVVTK RKAIAGFKIRE YPIGCMVTLRG RMYEFLDRL+ VALPRVRDFRG+SGR Sbjct: 61 SGQKPVVTKTRKAIAGFKIRENYPIGCMVTLRGQRMYEFLDRLVAVALPRVRDFRGISGR 120 Query: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGMNISITTTAKTDDEAKALLAAFKFPFRN 179 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRG+NISITTTAKTDDEAKALL AF FPFRN Sbjct: 121 AFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTAKTDDEAKALLTAFSFPFRN 179