BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0341.p         (104 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773559.1| 50S ribosomal protein L24 [Herbaspirillum se...   156   9e-37
ref|YP_001101385.1| 50S ribosomal protein L24 [Herminiimonas ars...   144   3e-33
ref|YP_001355090.1| large subunit ribosomal protein L24 [Janthin...   144   5e-33
ref|YP_004751072.1| 50S ribosomal protein L24p (L26e) [Collimona...   143   1e-32
ref|ZP_08274061.1| LSU ribosomal protein L24p (L26e) [Oxalobacte...   139   2e-31

>ref|YP_003773559.1| 50S ribosomal protein L24 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61651.1| 50S ribosomal subunit L24 protein [Herbaspirillum seropedicae SmR1]
          Length = 104

 Score =  156 bits (395), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 101/104 (97%), Positives = 102/104 (98%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVDADYVIVEGVNVAKKATRPNPMTGATGGIVDK 60
           MAKIRKNDEVIVLTGKDKGKRGVVTARV  DYV+VEGVNVAKKATRPNPMTGATGGIVDK
Sbjct: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104
           LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104


>ref|YP_001101385.1| 50S ribosomal protein L24 [Herminiimonas arsenicoxydans]
 sp|A4G9S7|RL24_HERAR RecName: Full=50S ribosomal protein L24
 emb|CAL63264.1| 50S ribosomal subunit protein L24 [Herminiimonas arsenicoxydans]
          Length = 104

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 89/104 (85%), Positives = 97/104 (93%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVDADYVIVEGVNVAKKATRPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV  RVDA+Y++VEGVNVAKKAT+PNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYLVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104
           LMPIHVSNVALFNAATGKADR  +K+VDGKKVR YKS+GE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>ref|YP_001355090.1| large subunit ribosomal protein L24 [Janthinobacterium sp.
           Marseille]
 sp|A6T3J3|RL24_JANMA RecName: Full=50S ribosomal protein L24
 gb|ABR88279.1| large subunit ribosomal protein L24 [Janthinobacterium sp.
           Marseille]
          Length = 104

 Score =  144 bits (362), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 90/104 (86%), Positives = 97/104 (93%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVDADYVIVEGVNVAKKATRPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV  RVDA+YV+VEGVNVAKKAT+PNPMTGATGGIVDK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVQRRVDANYVVVEGVNVAKKATKPNPMTGATGGIVDK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104
           LMPIHVSNVALFNAATGKADR  +K+VDGKKVR YKS+GE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRAGFKDVDGKKVRVYKSSGEAVKV 104


>ref|YP_004751072.1| 50S ribosomal protein L24p (L26e) [Collimonas fungivorans Ter331]
 gb|AEK60249.1| LSU ribosomal protein L24p (L26e) [Collimonas fungivorans Ter331]
          Length = 104

 Score =  143 bits (360), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/104 (84%), Positives = 98/104 (94%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVDADYVIVEGVNVAKKATRPNPMTGATGGIVDK 60
           M KIRK+DEVIVLTGKDKGKRGVV  RVDA++V+VEGVNVAKKAT+PNPMTG TGGI+DK
Sbjct: 1   MDKIRKSDEVIVLTGKDKGKRGVVKQRVDANHVVVEGVNVAKKATKPNPMTGVTGGIIDK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104
           LMPIHVSNVALFNAATGKADRV +K+VDGKKVR +KS+GEVVKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVGFKDVDGKKVRVFKSSGEVVKV 104


>ref|ZP_08274061.1| LSU ribosomal protein L24p (L26e) [Oxalobacteraceae bacterium
           IMCC9480]
 gb|EGF32463.1| LSU ribosomal protein L24p (L26e) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 104

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/104 (78%), Positives = 92/104 (88%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVDADYVIVEGVNVAKKATRPNPMTGATGGIVDK 60
           M KI+KNDEVIVL GKDKGKRG +  RVDAD+V+V+G+NVAKKAT+PNPMTG TGGIVDK
Sbjct: 1   MDKIKKNDEVIVLAGKDKGKRGTILKRVDADHVLVDGINVAKKATKPNPMTGTTGGIVDK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVKV 104
           LMPIHVSNVALFNAATGKADRV +K VDG  VR +KS+GE VKV
Sbjct: 61  LMPIHVSNVALFNAATGKADRVGFKTVDGGLVRIFKSSGEAVKV 104