BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0339.p         (90 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773557.1| 30S ribosomal protein S17 [Herbaspirillum se...   131   3e-29
ref|YP_001101387.1| 30S ribosomal protein S17 [Herminiimonas ars...   123   1e-26
ref|YP_001355092.1| small subunit ribosomal protein S17 [Janthin...   122   1e-26
ref|YP_004751070.1| 30S ribosomal protein S17p (S11e) [Collimona...   119   2e-25
ref|ZP_08274063.1| SSU ribosomal protein S17p (S11e) [Oxalobacte...   113   1e-23

>ref|YP_003773557.1| 30S ribosomal protein S17 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61649.1| 30S ribosomal subunit S17 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 90

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/90 (97%), Positives = 90/90 (100%)

Query: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNTAKA 60
          MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQN+AKA
Sbjct: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKA 60

Query: 61 GDVVEITESRPISKTKAWTVTRVVQEAQIV 90
          GDVVEITESRPISKTK+WTVTRVVQEAQIV
Sbjct: 61 GDVVEITESRPISKTKSWTVTRVVQEAQIV 90


>ref|YP_001101387.1| 30S ribosomal protein S17 [Herminiimonas arsenicoxydans]
 emb|CAL63266.1| 30S ribosomal subunit protein S17 [Herminiimonas arsenicoxydans]
          Length = 90

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/90 (85%), Positives = 80/90 (88%)

Query: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNTAKA 60
          MNDQVKQALKRTLIGKVVSDKMDKTVTV IER +KHPLYGKII R+ KYHAH+E N AKA
Sbjct: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSNKYHAHNEGNQAKA 60

Query: 61 GDVVEITESRPISKTKAWTVTRVVQEAQIV 90
          GD VEI E RPISKTKAWTVTRVVQ AQIV
Sbjct: 61 GDTVEIQEGRPISKTKAWTVTRVVQAAQIV 90


>ref|YP_001355092.1| small subunit ribosomal protein S17 [Janthinobacterium sp.
          Marseille]
 gb|ABR88408.1| small subunit ribosomal protein S17 [Janthinobacterium sp.
          Marseille]
          Length = 90

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 77/90 (85%), Positives = 80/90 (88%)

Query: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNTAKA 60
          MNDQVKQALKRTLIGKVVSDKMDKTVTV IER +KHPLYGKII R+ KYHAH+E N AKA
Sbjct: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSSKYHAHNEGNQAKA 60

Query: 61 GDVVEITESRPISKTKAWTVTRVVQEAQIV 90
          GD VEI E RPISKTKAWTVTRVVQ AQIV
Sbjct: 61 GDTVEIQEGRPISKTKAWTVTRVVQAAQIV 90


>ref|YP_004751070.1| 30S ribosomal protein S17p (S11e) [Collimonas fungivorans Ter331]
 gb|AEK60247.1| SSU ribosomal protein S17p (S11e) [Collimonas fungivorans Ter331]
          Length = 90

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/90 (83%), Positives = 80/90 (88%)

Query: 1  MNDQVKQALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNTAKA 60
          MNDQVKQALKRTL+GKVVSDKMDKTVTV IER +KHPLYGKII RT KYHAHDE N AK 
Sbjct: 1  MNDQVKQALKRTLVGKVVSDKMDKTVTVLIERHVKHPLYGKIIVRTNKYHAHDETNQAKE 60

Query: 61 GDVVEITESRPISKTKAWTVTRVVQEAQIV 90
          GDVVEI E RPISKTKAW+VTRVVQ AQ++
Sbjct: 61 GDVVEIQEGRPISKTKAWSVTRVVQVAQVL 90


>ref|ZP_08274063.1| SSU ribosomal protein S17p (S11e) [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32465.1| SSU ribosomal protein S17p (S11e) [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 91

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 74/91 (81%), Positives = 77/91 (84%), Gaps = 1/91 (1%)

Query: 1  MNDQVKQ-ALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNTAK 59
          MND VK+ ALKRTLIGKVVSDKMDKTVTV IER +KHPLYGKII R+ KYHAHDE N AK
Sbjct: 1  MNDPVKKVALKRTLIGKVVSDKMDKTVTVLIERHVKHPLYGKIIMRSNKYHAHDEANQAK 60

Query: 60 AGDVVEITESRPISKTKAWTVTRVVQEAQIV 90
           GD VEI E RPISKTKAWTVTRVVQ  QIV
Sbjct: 61 TGDTVEIQEGRPISKTKAWTVTRVVQAVQIV 91