BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0338.p         (64 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773556.1| 50S ribosomal protein L29 [Herbaspirillum se...    81   6e-14
ref|YP_004751069.1| 50S ribosomal protein L29p (L35e) [Collimona...    67   7e-10
ref|YP_001101388.1| 50S ribosomal protein L29 [Herminiimonas ars...    65   5e-09
ref|ZP_04580003.1| 50S ribosomal protein L29 [Oxalobacter formig...    64   1e-08
ref|ZP_08274064.1| LSU ribosomal protein L29p (L35e) [Oxalobacte...    64   1e-08

>ref|YP_003773556.1| 50S ribosomal protein L29 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61648.1| 50S ribosomal subunit L29 protein [Herbaspirillum seropedicae
          SmR1]
          Length = 64

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK
Sbjct: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60

Query: 61 DGQQ 64
          DGQQ
Sbjct: 61 DGQQ 64


>ref|YP_004751069.1| 50S ribosomal protein L29p (L35e) [Collimonas fungivorans Ter331]
 gb|AEK60246.1| LSU ribosomal protein L29p (L35e) [Collimonas fungivorans Ter331]
          Length = 63

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 53/60 (88%), Positives = 56/60 (93%)

Query: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKASELR KD+A L KEL ELLKAQFSLRMQIATQQL+NT+QLKKVRRDIARVKTVINSK
Sbjct: 1  MKASELRDKDQAALTKELNELLKAQFSLRMQIATQQLSNTSQLKKVRRDIARVKTVINSK 60


>ref|YP_001101388.1| 50S ribosomal protein L29 [Herminiimonas arsenicoxydans]
 ref|YP_001355093.1| 50S ribosomal protein L29 [Janthinobacterium sp. Marseille]
 sp|A4G9T0|RL29_HERAR RecName: Full=50S ribosomal protein L29
 sp|A6T3J6|RL29_JANMA RecName: Full=50S ribosomal protein L29
 emb|CAL63267.1| 50S ribosomal protein L29 [Herminiimonas arsenicoxydans]
 gb|ABR91656.1| 50S ribosomal protein L29 [Janthinobacterium sp. Marseille]
          Length = 63

 Score = 64.7 bits (156), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 51/63 (80%), Positives = 57/63 (90%)

Query: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKASEL+GKD+A L KEL +LLKAQF LRMQIATQQLNNT+QLKKVRRDIARVKTV+N K
Sbjct: 1  MKASELQGKDQAALTKELNDLLKAQFGLRMQIATQQLNNTSQLKKVRRDIARVKTVMNQK 60

Query: 61 DGQ 63
          D +
Sbjct: 61 DAK 63


>ref|ZP_04580003.1| 50S ribosomal protein L29 [Oxalobacter formigenes OXCC13]
 gb|EEO30976.1| 50S ribosomal protein L29 [Oxalobacter formigenes OXCC13]
          Length = 63

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/60 (85%), Positives = 55/60 (91%)

Query: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MKASELR KD+A L+ EL +LLKAQF LRMQIATQQLNNTAQLKKVRRDIARVKTV+NSK
Sbjct: 1  MKASELRSKDQAELKTELNDLLKAQFGLRMQIATQQLNNTAQLKKVRRDIARVKTVMNSK 60


>ref|ZP_08274064.1| LSU ribosomal protein L29p (L35e) [Oxalobacteraceae bacterium
          IMCC9480]
 gb|EGF32466.1| LSU ribosomal protein L29p (L35e) [Oxalobacteraceae bacterium
          IMCC9480]
          Length = 63

 Score = 63.5 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/63 (76%), Positives = 54/63 (85%)

Query: 1  MKASELRGKDKAGLEKELGELLKAQFSLRMQIATQQLNNTAQLKKVRRDIARVKTVINSK 60
          MK SEL+GKD+A L  EL  LLKAQF LRMQIATQQL+NT+QLKKVRRDIARVKTV+N K
Sbjct: 1  MKTSELQGKDQAALTIELNALLKAQFGLRMQIATQQLSNTSQLKKVRRDIARVKTVMNVK 60

Query: 61 DGQ 63
          D +
Sbjct: 61 DAK 63