BLASTP 2.2.17 [Aug-26-2007]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= 0001.0337.p         (139 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773555.1| 50S ribosomal protein L16 [Herbaspirillum se...   245   1e-63
ref|YP_001355094.1| 50S ribosomal protein L16 [Janthinobacterium...   238   3e-61
ref|YP_001101389.1| 50S ribosomal protein L16 [Herminiimonas ars...   237   4e-61
ref|YP_004751068.1| 50S ribosomal protein L16p (L10e) [Collimona...   234   4e-60
ref|ZP_04580002.1| large subunit ribosomal protein L16 [Oxalobac...   229   1e-58

>ref|YP_003773555.1| 50S ribosomal protein L16 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61647.1| 50S ribosomal subunit L16 protein [Herbaspirillum seropedicae SmR1]
          Length = 139

 Score =  245 bits (626), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60
           MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK
Sbjct: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60

Query: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120
           RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR
Sbjct: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120

Query: 121 LAAAKLPLSTTFVVRQVGQ 139
           LAAAKLPLSTTFVVRQVGQ
Sbjct: 121 LAAAKLPLSTTFVVRQVGQ 139


>ref|YP_001355094.1| 50S ribosomal protein L16 [Janthinobacterium sp. Marseille]
 sp|A6T3J7|RL16_JANMA RecName: Full=50S ribosomal protein L16
 gb|ABR89955.1| large subunit ribosomal protein L16 [Janthinobacterium sp.
           Marseille]
          Length = 139

 Score =  238 bits (606), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 133/139 (95%), Positives = 137/139 (98%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60
           MLQPARRKYRKEQKGRNTGISH+RGTAVSFG+FGLKA GRGRITARQIEAARRAMTRHIK
Sbjct: 1   MLQPARRKYRKEQKGRNTGISHSRGTAVSFGEFGLKAIGRGRITARQIEAARRAMTRHIK 60

Query: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120
           RGGRIWIR+FPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGK+LYEMDGVDEALAREAFR
Sbjct: 61  RGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKMLYEMDGVDEALAREAFR 120

Query: 121 LAAAKLPLSTTFVVRQVGQ 139
           LAAAKLPL TTFVVRQVGQ
Sbjct: 121 LAAAKLPLLTTFVVRQVGQ 139


>ref|YP_001101389.1| 50S ribosomal protein L16 [Herminiimonas arsenicoxydans]
 sp|A4G9T1|RL16_HERAR RecName: Full=50S ribosomal protein L16
 emb|CAL63268.1| 50S ribosomal subunit protein L16 [Herminiimonas arsenicoxydans]
          Length = 139

 Score =  237 bits (605), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 132/139 (94%), Positives = 136/139 (97%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60
           MLQPARRKYRKEQKGRNTGISH+RGTAVSFG+FGLKA GRGRITARQIEAARRAMTRHIK
Sbjct: 1   MLQPARRKYRKEQKGRNTGISHSRGTAVSFGEFGLKAIGRGRITARQIEAARRAMTRHIK 60

Query: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120
           RGGRIWIR+FPDKPIS KPAEVRMGNGKGNPEYYVAEIQPGK+LYEMDGVDEALAREAFR
Sbjct: 61  RGGRIWIRIFPDKPISNKPAEVRMGNGKGNPEYYVAEIQPGKMLYEMDGVDEALAREAFR 120

Query: 121 LAAAKLPLSTTFVVRQVGQ 139
           LAAAKLPL TTFVVRQVGQ
Sbjct: 121 LAAAKLPLLTTFVVRQVGQ 139


>ref|YP_004751068.1| 50S ribosomal protein L16p (L10e) [Collimonas fungivorans Ter331]
 gb|AEK60245.1| LSU ribosomal protein L16p (L10e) [Collimonas fungivorans Ter331]
          Length = 139

 Score =  234 bits (597), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 130/139 (93%), Positives = 135/139 (97%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60
           MLQPARRKYRKEQKGRN GISH+RGTAVSFG+FGLKA GRGRITARQIEAARRAMTRHIK
Sbjct: 1   MLQPARRKYRKEQKGRNKGISHSRGTAVSFGEFGLKAIGRGRITARQIEAARRAMTRHIK 60

Query: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120
           RGGRIWIR+FPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGK+LYEMDGVDE LAREAFR
Sbjct: 61  RGGRIWIRIFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKMLYEMDGVDETLAREAFR 120

Query: 121 LAAAKLPLSTTFVVRQVGQ 139
           LAAAKLPL TTFVVRQ+GQ
Sbjct: 121 LAAAKLPLLTTFVVRQIGQ 139


>ref|ZP_04580002.1| large subunit ribosomal protein L16 [Oxalobacter formigenes OXCC13]
 gb|EEO30975.1| large subunit ribosomal protein L16 [Oxalobacter formigenes OXCC13]
          Length = 139

 Score =  229 bits (583), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 128/139 (92%), Positives = 133/139 (95%)

Query: 1   MLQPARRKYRKEQKGRNTGISHTRGTAVSFGDFGLKATGRGRITARQIEAARRAMTRHIK 60
           MLQP+RRKYRKEQKGRNTGISH RGT VSFGDFGLKA GRGRITARQIEAARRAMTRHIK
Sbjct: 1   MLQPSRRKYRKEQKGRNTGISHERGTKVSFGDFGLKAVGRGRITARQIEAARRAMTRHIK 60

Query: 61  RGGRIWIRVFPDKPISQKPAEVRMGNGKGNPEYYVAEIQPGKVLYEMDGVDEALAREAFR 120
           RGGRIWIRVFPDKPIS+KPAEVRMG+GKGNPEYYVAEI+PGKVLYEMDGVDEALAREAFR
Sbjct: 61  RGGRIWIRVFPDKPISEKPAEVRMGSGKGNPEYYVAEIRPGKVLYEMDGVDEALAREAFR 120

Query: 121 LAAAKLPLSTTFVVRQVGQ 139
           LAAAKLPL T FV RQ+GQ
Sbjct: 121 LAAAKLPLQTVFVTRQIGQ 139